Gene detail information of Glyur001072s00031300 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G23960.2 | 4.00E-96 | terpene synthase 21 |
| NR | KEH29688.1 | 0 | sesquiterpene synthase [Medicago truncatula] |
| Swissprot | tr|B9SCB6|TPS2_RICCO | 2.00E-168 | Probable terpene synthase 2 |
| trEMBL | tr|A0A072UKS0|A0A072UKS0_MEDTR | 0 | Sesquiterpene synthase {ECO:0000313|EMBL:KEH29688.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01072 | 12046 | 16386 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001072s00031300.1 | PF01397.16 | Terpene_synth | 42 | 185 | 3.00E-50 |
| Glyur001072s00031300.1 | PF03936.11 | Terpene_synth_C | 215 | 445 | 1.20E-49 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.327 |
| SRR1783600 | control | 16.272 |
| SRR1783602 | moderate drought stress | 17.020 |
| SRR1811619 | moderate drought stress | 17.157 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.506 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.387 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.061 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.020 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.551 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.660 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.790 |
| SRR2868004 | Drought Stress (root) | 21.598 |
| SRR2967015 | Control (root) | 29.444 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.035 |
| SRR9715739 | Root | 0.234 |
| SRR9715742 | Root | 4.216 |
| SRR9715743 | Root | 4.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.002 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 93.801 |
| SRR8400027 | Control - Root | 70.383 |