Gene detail information of Glyur001071s00028848 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G40100.1 | 2.00E-43 | light harvesting complex photosystem II |
| NR | ACU23805.1 | 1.31E-63 | unknown [Glycine max] |
| Swissprot | tr|Q9S7W1|CB4C_ARATH | 2.00E-52 | Chlorophyll a-b binding protein CP29.3, chloroplastic (Precursor) |
| trEMBL | tr|C6TLL3|C6TLL3_SOYBN | 5.00E-64 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU23805.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01071 | 83727 | 87685 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001071s00028848.1 | PF00504.16 | Chloroa_b-bind | 72 | 149 | 8.00E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 24.113 |
| SRR1783600 | control | 23.624 |
| SRR1783602 | moderate drought stress | 18.710 |
| SRR1811619 | moderate drought stress | 17.982 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.785 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.468 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.181 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.529 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.180 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.744 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 692.236 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 697.688 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.896 |
| SRR2868004 | Drought Stress (root) | 7.150 |
| SRR2967015 | Control (root) | 4.985 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 311.568 |
| SRR9715740 | Leaf | 392.547 |
| SRR9715741 | Leaf | 189.926 |
| SRR9715739 | Root | 6.463 |
| SRR9715742 | Root | 7.649 |
| SRR9715743 | Root | 6.517 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 28.952 |
| SRR8749028 | MeJA induced 9h | 19.751 |
| SRR8749029 | MeJA induced 9h | 21.491 |
| SRR8749030 | Uninduced | 21.192 |
| SRR8749031 | Uninduced | 6.419 |
| SRR8749032 | Uninduced | 19.396 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.120 |
| SRR8400027 | Control - Root | 10.422 |