Gene detail

Gene detail information of Glyur001071s00028836

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G05730.1	0	anthranilate synthase alpha subunit 1
NR	XP_004500675.1	0	PREDICTED: anthranilate synthase component I-1, chloroplastic-like [Cicer arietinum]
COG	YP_005444340.1	2.00E-145	anthranilate synthase component I [Phycisphaera mikurensis NBRC 102666]
Swissprot	tr\|P32068\|TRPE_ARATH	0	Anthranilate synthase alpha subunit 1, chloroplastic (Precursor)
trEMBL	tr\|G7JB70\|G7JB70_MEDTR	0	Anthranilate synthase alpha 1 {ECO:0000313\|EMBL:AES71122.1}

Sequence

Transcript Sequence

>Glyur001071s00028836.1
ACATCATTACTCAAAAAAGAAAACAAAGATTCAGATGTAACCGTAGCTAGTTTTAATGGTGGTGCATTGGAACTTGGACAACTTTGTAGCAAAGAGGTAGAAGCTGCTGCTGCTACTGCTGTTGCTGTAACTGTCACTGACACTGAGTTTTCATTTTCACAATCACAACAACATGCTCTCTGTTACGCATCCAACTTCCCTCATGTCTTCAAATGCGTCCACATTGCAAGCCCTAGGCTTTTCCCGCCGCTTNGTTTCTCCCGCCGGCAGCCGTCTCTCTTCGGCGCCGGTGCTTACCGGCGTTTCAATGGGAAGCTCACTCTCACTCACTCCTCTCACATTGAGAGAGAGAAAATCTTTGACGATGCATCTACTACTTTTGCAGTTGAGGAGAGAAGAAAGTTTGTAGAGGCTTCAAAAAGTGGAAACATGATTCCTCTCTATCAGTGCATATTCTCTGACCAACTCACTCCTGTTCTTGCTTACCGGTGTTTGGTTAAGGAAGATGATCGGGATGCTCCAAGCTTTCTTTTTGAGTCTGCTGAGCCTAATTTTCAAGCCTCGAATGTCGGGCGCTATAGTGTTGTCGGAGCTCATCCGACAATGGAGATTGTTGCGAAAGAAAACAAGGTTACNATAATGGACCATGAATTCGGTCAATTGACTGAGGAAATTGTGGATGATCCTATGATGATTCCCAGAAGAATCTCAGAGGGCTGGAAACCCTATCTTACTGATGAACTTCCTGATGCATTCTGTGGTGGTTGGGCAGGTTATTTCTCTTATGACACGGTTCGTTATGCGGAAAAGAAAAAGCTANCATTTTCACATGCCCCAGAGGATGACAGGAACCTTGCAGACATACATTTGGGCCTCTATGAGAATGTGATCGTGTTTGATCACGTGGAGAAGAAAGCATATGTGATTCTTTGGGTGAGGATGGACCGATACCCCTCGGCTGAGAGCGCTTACAAGGATGGAATGGAACGATTAGAAAAAATAGTGGCCAAATTACAAGATAGCAAACCCCCAAGGCTGGCTCCTGGCTCTGTGGATTTGCAAACTCGCCATTTTGGTCCTCCTTTGAAGAAATCAAACATGACAGCTGAAGCATACAAGGAGGCAGTCCTTCAGGCAAAAGAACACATTAAAGCNGGGGATATTTTTCAGATTGTATTAAGTCAGAGATTTGAACGAAGAACATTTGCCGATCCATTTGAAGTTTATAGAGCACTGAGAGTTGTGAATCCAAGTCCTTATATGACTTATTTGCAGGCTAGGGGATGTATTCTTGTTGCTTCAAGTCCGGAGATTCTTACGCGTATAAAGAATAAGAAGATTGTGAATCGTCCATTGGCTGGGACAGCTAGAAGGGGCAACACAGCAGAAGAAGATGAACAGTTAGAAGTGAAGCTCCTCGCAGATGAAAAGCAATGTGCGGAGCATGTNATGCTGGTTGATTTGGGACGCAATGATGTTGGAAGGGTCTCAAAAAGTGGTTCTGTTAAGGTGGAAAAGCTTATGAATATTGAACGATATTCCCATGTCATGCACATAAGCTCAACAGTTACGGGAGAGTTGCAAGACCATTTGACTGGCTGGGATGCCCTGCGTGCTGCATTGCCTGTTGGAACCGTCAGTGGAGCACCAAAGGTGAGGGCGATGGAGTTAATTGATGAGTTGGAAGTGACAAGGCGGGGGCCTTATAGCGGTGGGTTCGGATACATTGCTTTCTCTGGTGACATGGACATAGCTCTAGCTCTCAGAACAATAGTGTTCCCAACCGGAACTCGGTACGACACAATGTACTCATACAAGGACCTAAACCAACGCCAGGAGTGGATTGCTTACCTTCAAGCTGGTGCTGGTATAGTTGCTGACAGTGACCCTGATGATGAGCACCAAGAGTGTCAAAACAAAGCTGCTGGTCTTGCTCGCTCCATTGACTTGGCTGAGGCCGCATTTGTTGATAAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01071	19029	24919	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01657	trpE	EC:4.1.3.27	Biosynthesis of amino acids	map01230
			Phenylalanine, tyrosine and tryptophan biosynthesis	map00400
			Quorum sensing	map02024
			Biofilm formation - Pseudomonas aeruginosa	map02025

Gene Ontology

biological_process

GO:0000162 tryptophan biosynthetic process

GO:0009058 biosynthetic process

molecular_function

GO:0004049 anthranilate synthase activity

GO:0016833 oxo-acid-lyase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001071s00028836.1	PF04715.8	Anth_synt_I_N	154	308	9.60E-30
Glyur001071s00028836.1	PF00425.13	Chorismate_bind	369	640	7.50E-86

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.296
SRR1783600	control	1.247
SRR1783602	moderate drought stress	0.371
SRR1811619	moderate drought stress	0.357

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.741
DRR006520	Root Summer glycyrrhizin high producing strain	0.688
DRR006521	Root Winter glycyrrhizin high producing strain	0.051
DRR006522	Root Winter glycyrrhizin high producing strain	0.109
DRR006523	Root Summer glycyrrhizin low producing strain	0.222
DRR006524	Root Summer glycyrrhizin low producing strain	0.149
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.870
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.882

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.065
SRR2868004	Drought Stress (root)	1.364
SRR2967015	Control (root)	1.874

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.568
SRR9715740	Leaf	0.008
SRR9715741	Leaf	0.373
SRR9715739	Root	0.877
SRR9715742	Root	1.536
SRR9715743	Root	1.197

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.005
SRR8749028	MeJA induced 9h	1.289
SRR8749029	MeJA induced 9h	1.522
SRR8749030	Uninduced	0.107
SRR8749031	Uninduced	0.118
SRR8749032	Uninduced	0.547

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.312
SRR8400027	Control - Root	3.966