Gene detail

Gene detail information of Glyur001070s00024971

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G77260.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
NR	XP_004498352.1	PREDICTED: probable methyltransferase PMT10-like [Cicer arietinum]
Swissprot	tr\|Q94KE1\|PMTA_ARATH	Probable methyltransferase PMT10
trEMBL	tr\|A0A072VGF4\|A0A072VGF4_MEDTR	Methyltransferase PMT16, putative {ECO:0000313\|EMBL:KEH40508.1}

Sequence

Transcript Sequence

>Glyur001070s00024971.1
CACACACACACAAGTACACAAGTACACATCACATTCCTGGTTCTTGTCTCATTTCCGTTTCGGGGGTCTCAACTCAACAACATCGTGAGTAACTTGCACGCTCAATCAATCAATCCTCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAAAACAAGATCCACCCTCTCTCTCTATCAACAACCATTTCCAAAATTTCCATCACTTCTACTTCTTCTCTTGCCACTGTGTGTGTGTCCAAATTCCATAATAATGAAGTCTCTGCTTACAACGGACATTCTGAAAACATCTTCCTTCGTTAAAATCACCGCCCTCTCACTCCTCTCTCTCACCCTCTTCCTCTTCCTCTTCACCACCACTAACTCTCACAACTCCCTCGCCTCCTTCTTCTTCCCCGCTTCCCCCTCGCCGGAGCAGCAGCATCATCAACAACAACAACCTCCTCTTCCTCCACCTCCACCTCGGAGACCAAAGGTTTTCCGTCTCCCTCCGTTGCCGCCAGTGGAGCGAATGGGCGTGGTGGACGAAAACGGCGTCATGACCGACAATTTCACCGTAGGGGAGGAGGACCACTCGGGTCCCGACCCGGTCGAGGACCTGCTGAGTTGGAAGAACGATTCNCGAGGTGGGGAAATAATGAAGGGATCAAAGAAGGTGGAGAGGTATGAGGTGTGCGATGTGGGAATGGTGGATTATATACCGTGTTTGGATAATGTGGAAGCGATTGAGGGGTTGGAGAAAAAGGGGAACGGGAGCGTGAGAGGGGAGAGGTACGAGCGGCATTGTCCTGAGGAAGGGAAGGGTTTGAATTGCGTGGTGCCTGCTCCACGTGGGTATCGGAGCCCCATCNTTTGGCCCCAGAGCAGAGACGAGATTTGGTTCAGTAATGTACCCCATACACGTCTGGTTGAGGATAAAGGTGGCCAAAATTGGATATCAATAAAGAACGATAAATTTGTTTTCCCTGGAGGTGGAACACAATTTATACATGGTGCAGATAAATACTTGGATCAGATTTCAGCGATGGTACCTGACATTGCATTTGGTCANAACACCAGAGTTGCTTTAGACATTGGCTGTGGAGTGGCAAGTTTTGGTGCATTTTTAATGCAACGCAATGTGACCACTCTTTCAATAGCACCAAAAGATGTTCATGAAAACCAGGTTCAATTTGCTCTTGAGCGTGGTGTGCCCGCCCTTGTNGCAGTATTTGCTACACACCGTTTGTTGTTCCCAAGCCAGGCATTTGACCTCATCCATTGTTCAAGATGCAGGATTAATTGGACTCGTGATGATGGAATTTTGCTTCTTGAGGCCAACAGGCTTTTGAGGGCAGGTCGCTACTTTGTCTGGGCAGCGCAGCCTGTATACAAACATGAAGAGAGCCTTCAAGAACAATGGAAAGAAATGGAGAACCTGACAGCTCGCATGTGTTGGGAACTTGTACGGAAGGAGGGTTATATTGCTATATGGCGGAAACCTATGANCAATAGCTGCTATCTTAGTCGTGACATTGCTGTGCATCCTCCATTATGTGAGTCCACTGATGATCCAGATGATGTTTGGTATGTCGGTCTTAAGGCATGCTTAACTCAATTACCTAGTAGTGGATATGGAGTGAATGTTACTAAGTGGCCTTCACGCCTTCATCAACCACCAGACAGACTTCGAAGCATCAAAATGGATGCTGTTATATCAAGAAAGGAACTCTTTAACGCCGAATCAAAATATTGGAATGAAATAATATATAGTTATGTCCAGGCTTATCATTGGAAGGAGTACAACCTGAGAAATGTAATGGACATGAGGGCAGGATTTGGAGGGTTTGCTGCAGCACTGCATGATTTCCAGATTGACTGCTGGGTTATGAATGTTGTTCCTGTTAGTGGATTCAATACCTTGCCTGTGCTATATGATCGAGGGCTGATAGGACTTATGCATGATTGGTGCGAGCCATTTGATACGTACCCAAGAACATATGATCTGCTACATGCAGCTGGTCTCTTCTCCATTGAAAAAAAGAGGTATGTCGGTCTTAAGGCATGCTTAACTCAATTACCTAGTAGTGGATATGGAGTGAATGTTACTAAGTGGCCTTCACGCCTTCATCAACCACCAGACAGACTTCGAAGCATCAAAATGGATGCTGTTATATCAAGAAAGGAACTCTTTAACGCCGAATCAAAATATTGGAATGAAATAATATATAGTTATGTCCAGGCTTATCATTGGAAGGAGTACAACCTGAGAAATGTAATGGACATGAGGGCAGGATTTGGAGGGTTTGCTGCAGCACTGCATGATTTCCAGATTGACTGCTGGGTTATGAATGTTGTTCCTGTTAGTGGATTCAATACCTTGCCTGTGCTATATGATCGAGGGCTGATAGGACTTATGCATGATTGGTGCGAGCCATTTGATACGTACCCAAGAACATATGATCTGCTACATGCAGCTGGTCTCTTCTCCATTGAAAAAAAGAGGAATAAGTGCAATATCTCAACCATCATGCTCGAGATGGATCGGATGCTAAGACCGGGTGGGCGTGTATATATACGTGACACCATCCATGTTATCGATGAACTTGAAGAAATCGCAACTGCAATGGGATGGGTGAGTGCCCAGAATGATGTAGGAGAGGGTCCCTATGCAAGCTGGAAGATATTAAGGTGTGAGAAGCGCTTCTGAATTGCTCAATTGTATCATCAGTAACTTAAGAGAACCATATATTGGTTCATGCAACCGGAACATGGTAGTAGTGTACCTGAAATCTCTCATTTAGTGCCAGAAATGTGACAACAACAATAACTAACCCTTGCATTGTTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01070	5373	14290	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001070s00024971.1	PF03141.11	Methyltransf_29	147	591	7.50E-192
Glyur001070s00024971.2	PF03141.11	Methyltransf_29	147	656	5.90E-214

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.669
SRR1783600	control	6.890
SRR1783602	moderate drought stress	10.505
SRR1811619	moderate drought stress	10.122

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.629
DRR006520	Root Summer glycyrrhizin high producing strain	6.307
DRR006521	Root Winter glycyrrhizin high producing strain	7.053
DRR006522	Root Winter glycyrrhizin high producing strain	6.791
DRR006523	Root Summer glycyrrhizin low producing strain	11.804
DRR006524	Root Summer glycyrrhizin low producing strain	11.753
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.706
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.815

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.250
SRR2868004	Drought Stress (root)	8.560
SRR2967015	Control (root)	9.334

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.575
SRR9715740	Leaf	1.938
SRR9715741	Leaf	3.092
SRR9715739	Root	2.130
SRR9715742	Root	7.476
SRR9715743	Root	6.792

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.273
SRR8749028	MeJA induced 9h	3.152
SRR8749029	MeJA induced 9h	1.981
SRR8749030	Uninduced	0.866
SRR8749031	Uninduced	0.132
SRR8749032	Uninduced	0.514

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.725
SRR8400027	Control - Root	10.983