Gene detail

Gene detail information of Glyur001069s00022473

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G21660.2	6.00E-36	cold, circadian rhythm, and rna binding 2
NR	XP_003606921.1	9.84E-49	Glycine-rich RNA binding protein [Medicago truncatula]
COG	YP_003267833.1	1.00E-21	RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
Swissprot	tr\|P49310\|GRP1_SINAL	5.00E-45	Glycine-rich RNA-binding protein GRP1A
trEMBL	tr\|G7JHA8\|G7JHA8_MEDTR	4.00E-49	RNA-binding (RRM/RBD/RNP motif) family protein {ECO:0000313\|EMBL:AES89118.1}

Sequence

Transcript Sequence

>Glyur001069s00022473.1
CAAATTTACTTGACCAAAAAAAGGTCACATTCAAATTTTGAATGCACAGGATTCCAGATCCAGAGTCCACACACTAACACAGTCCTAAGCTTAACCACACGCCGTTACCCTAGTTAACAAATAGCCTGCTATATAACAAGTAAAAACCCTAATTTAACCCACGCCATAACCCGAGTTAACAAATCTCCTGCTATATAAACCCCCGTTGGTGGCCTCGAAAAAAATATCTTCGAGCTACCTTTTCCCTTTATACCCTCTCTGTCCCAAATTTTCTAGGGTTACTTTACTTTTTTTCGTCTTCAATGGCTTCTGCAGATGTTGAGTACCGGTGTTTCGTCGGTGGGCTTGCATGGGCCACCGATAGCGAGGCCCTTGAGAAGGCCTTCTCTTCCTTCGGCGAGATCGTCGATTCGAAGGTTATCAACGATCGTGAGACGGGAAGGTCAAGGGGATTCGGATTTGTTACCTTTGCTTCGGAGCAGTCTATGAGAGACGCGATCGAGGGAATGAACGGCCAGGACATTGACGGCCGTAACGTGACCGTGAATGAAGCTCAATCCCGCGGCAGAGGCGGCGGTGGAGGCGGTGGATTTGGTGGAAACGGTGGTGGCGGCTATGGTGGACGTCGCGAGGGTGGATACAACAGAAGCGGTGGTGGTGGAGGCTATGGAGGTGGCGGTTACGGTGGTAGCAGAGACCGTGGTTATGGCGGTGACCGTGGTTCTAGCTATTCCCGCGGTGGTGCGTTTGTGTTCTTCTTTCTCAATTTCTCAATGGCTTCCGCAGATGTTGAGTACCGTTGCTTCGTCGGTGGGCTTGCATGGGCCACNGATAGCGAGGCCCTTGAGAAGGCCTTCTCTCCCTACGGCGAGATCGTCGATTCGAAGGTTATCAACGATCGTGAGACCGGAAGGTCAAGGGGATTCGGATTTGTTACCTTTGCTTCGGAGCAGTCTATGAGAGACGCAATCGAGGGAATGAACGGCCAGGACATTGACGGCCGTAACGTGACCGTGAATGAAGCTCAATCCCGCGGCAGAGGCGGCGGTGGCGGNGGTGGTGGTGGTGGAGGATATGGTGGAAACGGCGGAGGCTATGGCGGACGTCGTGAGGGTGGATACAATAGAAGCGGTGGTGGTGGCGGTGCCTACGGAGGAGGAGGTGGTTATGGTGGTAGCAGAGACCGTGGATACGGCGGCGACCGTGGCTCCAGCTACTCTCGCGGTGGTGGTGGCTCTTGGAACTAGGGCTTTAGATCTAGTTNTTGTTGGGAGTTTATTTATGATCTATGTTCCTGTTCCGTTGTTACTTTAGGCGTTCGAATGAATCCATGGTGTGAGTTTGTCTATTGTTCTGGTTTCTGTTACTGTGCTTCCAATCTGCTTGTGTATAAGCGATCTATTGAAATGAAAGGATAGAGACAAGTTAGTAGCGACAAATATCTCCAGTTTTTTTTATTGTTAATACGTCTTTCGTTTTATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01069	60214	67749	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001069s00022473.1	PF00076.17	RRM_1	11	79	3.00E-23
Glyur001069s00022473.1	PF00076.17	RRM_1	168	236	1.70E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	982.873
SRR1783600	control	992.800
SRR1783602	moderate drought stress	1608.446
SRR1811619	moderate drought stress	1618.388

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1745.285
DRR006520	Root Summer glycyrrhizin high producing strain	1754.891
DRR006521	Root Winter glycyrrhizin high producing strain	1444.596
DRR006522	Root Winter glycyrrhizin high producing strain	1431.193
DRR006523	Root Summer glycyrrhizin low producing strain	2736.994
DRR006524	Root Summer glycyrrhizin low producing strain	2788.696
DRR006525	Leaf Summer glycyrrhizin high producing strain	875.207
DRR006526	Leaf Summer glycyrrhizin high producing strain	888.713

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1238.787
SRR2868004	Drought Stress (root)	995.551
SRR2967015	Control (root)	1770.339

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	213.093
SRR9715740	Leaf	321.201
SRR9715741	Leaf	237.521
SRR9715739	Root	343.048
SRR9715742	Root	534.601
SRR9715743	Root	458.724

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	756.016
SRR8749028	MeJA induced 9h	676.364
SRR8749029	MeJA induced 9h	744.745
SRR8749030	Uninduced	382.884
SRR8749031	Uninduced	304.932
SRR8749032	Uninduced	469.907

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1313.361
SRR8400027	Control - Root	1375.294