Gene detail

Gene detail information of Glyur001069s00022469

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G21710.1	3.00E-158	Mitochondrial transcription termination factor family protein
NR	XP_004507447.1	0	PREDICTED: uncharacterized protein LOC101506030 isoform X2 [Cicer arietinum]
trEMBL	tr\|G7JG65\|G7JG65_MEDTR	0	Transcription termination factor family protein {ECO:0000313\|EMBL:AES89105.1}

Sequence

Transcript Sequence

>Glyur001069s00022469.1
ATGTCAAGAGGGAAACTTGAGTCCATAAGGAATCGGGTAGAGTGGTTGAAGTCGGTGCATGTGAAAGGAGAGTTTATTGGGGTTGCAATGTTGAAGGGTGGAGATAATTTTTTGCAACGCAGCAATGAGGAGCTGGATAATATTGTTGAGTATTTGGAGTCCAATGGAGTCAGGAGGGATTGGATGGGTTATGTCATGAGTCGATGTCCTCAGTTGTTGTCTTACACCTTGGAAGAAGTGAAGACTCGCGTGCAGTTCTACCTGGACATGGGTTTAGATGTGAAGGATTTCGGCACAATGGTTTTTGATTTTCCTAAAGCACTTGGTTACTTTACTCTTGAAGAAATGAACCAAAAGGTTGATTACTTGAAAGAATTCGGGCTTCAAAGTAGGGATGTTGGTAGATTGCTTGCATTTAGGCCACAATTGATGGCGTGCAGCATTGATGAACAATGGAAACCTCTTGTTAAGTATCTGTACTATTATGGCATCACCCGAGATGGTATGAGGAGAATGCTTACCATTAAACCAATGGTCTTTTGTGTTGACTTGCAGACGACTATTGTGCCAAAGGTACAATTTTTTCAGGACATAGGAGTTCATAATGAAGGGATTGGCAATATGCTTGTAAAATTTCCTACACTACTCACTTACAGCCTGGACAAGAAGATTAAGCCAGTGGTCATATTCTTGATGACAAAGGCTGGAGTGAGTGAGAAAGATATTGGAAAGGTTGTAGCTCTTGGACCTGAGCTCTTGGGATGCAGCNTAATACATAAGCTTGAAGTAAATGTAAAATATTTTTTGTCTCTTGGCATACGTCTTCGGCAGTTGGGTGAAATGATTGCTGATTTCCCAATGCTACTCAGATACAATATAGACGTTCTTCGTCCTAAGTATATTTATTTGCGGAAAACCATGGTCCGGACTTTGCAAGACCTCATCGAGTTTCCAAGGTTTTTCAGCTATTCTCTTGATGGGCGAATTATCCCAAGACACAAGGTTCTGGTGGAGAATCAGATTAATGTTAAGCTGAAATGCATGTTGGCCTGCACAGATGAAGAATTTAACNAAATGGTCAAGGATATGATTAGAAAACGCCACAAATTTCAATCTGCTGTCATGAAGGAGGATACTACACATCCCAAATCTGTCATTACTGGGGATATTACTACACCCCAGACATAAAAAGGAAAAATTGATGGCTCTGTGGAAAACAAAATTGTGATTGAGAAAGTAAAGAAATATAGTAATTTTACTATCATAACTTCATCGGTCAGACAAGTAATTGTCATAAAATCAAAATTGTTCTACTCAAAATATGGAGGTGCTATATGACTCTGTTAACAGCTCATATAGTGCAGAAGAGACACCTGGGTGGAGGAAAAGGAGCTCCTATGTCTTGGTAAACAAAAAGAAGCTTGCAATTTATCATTCACTACCTCACTTGTGAAGATGGAATTTATGAGTTATGAAGACTTGACCTGTGCACTTTTTGCATTCTCTCTCTTGTATGGTCTAAGGTATATGCTCATAACACACTTTGGAACATGTATGGTTTTTAGTTGTAAATGTACGTTTTCCAATAAAGAACTCTAGAGTTNCTTTGGGTTCAAACGTATTTTTGTAATCTTTCAATTGAAAATCAAACATGCACTTAAATGTATATGTTGTACGTACTACTTGTCATTGTCTACTTTACTACTTATTTGTCTTTTTTTTTTTTTTCCTTTCCACGTTATCTGTGGGACTCATTTTTCCCCCGACAGGAACACTTGACTGTTGTGCTATTGAATAATCTCTGTATGAACATGTAATTATGGTTATCATTCTTGCATGGAATCCTGCTGTACACAAAAAACTCAACCCTTCTCCTGAACTGTTGGACTTGAGATGGCCTGTGAAATATACATCAACTCTTAGTTATTTTGATCCATAAATAACATGGTTGCCGCCATTAATCAGGTCCCACATGGCTTACCTGGTATTACGTTATTCTATCAGTTACGGATCATTCCAATGTGTGTAAGGATCGAGTGAGTGTCTGTAACATGTAATTGCGACTAATCAGTATATACACTATACAATACTCTGATGAGCCTTTGTTCCACTGCCCGTGCTCATGTTTTTATATGTGCGTTTTGCTTTATCTATTGTCGTTATCATGGTAATCCTTGCTCTTTCATTTGGTCAACTCTCGAGACTCATATAATTGCGTTGGCAGGAAAATCAATTGGTAAAGATATGATCGTATGTAAATCATATTCATAGCTGATGCTTATCACATGCCGTTCTTGGAGTGTGACTATCATAAAATTTTACAAACCAAAAGAAATTGCAATGGAGTAACTTTCCCACGTCATTAATTTTTCCAAACCAAAAGAAAAATGATATTAACANAAGTCAAGGTACCTTTAAATGAGGGCGTACTTTTTCTTCCATGTCAAAATTCTTCATACAGAAATTGAACTAATCCACCCACATGTACTGTTCGACATGAGAGAAGAAGAAAAAAAATATGAATGACAAGAAATACATTAGACATGCATGAATGGATCATTTTAGTCAATTCCAAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01069	38675	42132	-

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005739 mitochondrion

molecular_function
GO:0003690 double-stranded DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001069s00022469.1	PF02536.9	mTERF	40	357	4.40E-54
Glyur001069s00022469.1	PF02536.9	mTERF	43	110	1.90E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.781
SRR1783600	control	1.763
SRR1783602	moderate drought stress	2.608
SRR1811619	moderate drought stress	3.396

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.943
DRR006520	Root Summer glycyrrhizin high producing strain	3.561
DRR006521	Root Winter glycyrrhizin high producing strain	4.012
DRR006522	Root Winter glycyrrhizin high producing strain	3.365
DRR006523	Root Summer glycyrrhizin low producing strain	4.288
DRR006524	Root Summer glycyrrhizin low producing strain	4.724
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.602
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.924

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.144
SRR2868004	Drought Stress (root)	0.824
SRR2967015	Control (root)	3.337

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.519
SRR9715740	Leaf	7.747
SRR9715741	Leaf	3.336
SRR9715739	Root	0.080
SRR9715742	Root	0.798
SRR9715743	Root	1.140

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.889
SRR8749028	MeJA induced 9h	2.523
SRR8749029	MeJA induced 9h	1.726
SRR8749030	Uninduced	0.741
SRR8749031	Uninduced	1.174
SRR8749032	Uninduced	0.734

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.571
SRR8400027	Control - Root	1.432