Gene detail

Gene detail information of Glyur001069s00022467.3

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G39280.1	7.00E-165	phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative
NR	KHN25375.1	0	Putative phenylalanine--tRNA ligase alpha subunit [Glycine soja]
COG	YP_687290.1	7.00E-67	phenylalanyl-tRNA synthetase subunit alpha [Methanocella arvoryzae MRE50]
Swissprot	tr\|Q9T034\|SYFA_ARATH	0	Probable phenylalanine--tRNA ligase alpha subunit
trEMBL	tr\|G7JG63\|G7JG63_MEDTR	0	Phenylalanyl-tRNA synthetase alpha chain, putative {ECO:0000313\|EMBL:AES89103.1}

Sequence

Transcript Sequence

>Glyur001069s00022467.3
ATGAGATTAGAGATTCGGGTGAGTTTGCTGTGGAACGTGGCATTAACCATCAGATACGTGAATGCAGAGGTGGGTAACCGTATCATATCCTCATATCCATATCCAACCCTGAAGAATTCAAATGGTAAATATAACTTGTGGATGTTGTTTATATGGTGCACACAGGATATTAAGAGAGAGACGTGGGTGCTCACTGATGAAGGGAAGACTTATGCTGCTACTGGATCCCCGGAAGCACAACTCTTGTTGGCTATTCCACCAGAGGGTATCTCCAGAGATGAACTTCAGAAAAAGCTGGGTCCTTCAGTCTTTAAGATAGGTTGTGCCCAGGCTGCAAAGAACAAATGGGTCGAGATGGGGAAACAACTCATCTCTAGGAAGCAGGTCGAACATGTGGAGGACAGAGTCAAATACCTGCTTCTTCAAATACAACAACAGGGACAGGCTATGTCTTGGGTTTGTGATAATAATACCTTTGGGAAAATGGCAAGGTTTTGTATGGAGAATCAGATTCAACTCAAGGGCATTGGTTCAGATGATATCAAAGCACTCAAAGCAAGAAAGCTTATTATTCCACAGACGTGGAAGGGTTACTCAGTGAAAAAGGGTCCTAACTATGCTCCAAAAAGAAAGAAGGTTGTAACTGATTTAACTCGAGATACTTTTCAGAGTGGTGAGTGGAAGCATTCAGAGTTCAAAAAGTACAATTACTGTGCTAAAGGTCAACCTCCTGAGGGTGGCCATCTTCATCCATTGCTGGAGGCAAGGAGATATCTCCCCTGTACGGTATCTACTGAAACTGATTTTCCTCTGTATGGGGTNAGTCTTATCTTTTTATGTTTGAGGAGATGCCCACAAATAATTTTGTTGAGAGCAGCTTCTGGAACTTTGATGCCTTATTCCAGGCANAACAACACCCAGCTCGTGATTCACACGACACATTTTTTTTGGAAGGTTAGTAAAATCTTTATTCTTTCAATGCTAGTCAAATATTATGTGGCTTCCATTTTGAGTACAGATGACACATCTGCAGCTCCTTCAACAACAAAGAAACTGCCTGAAGATTACGTTCAGCGGGTGAAGCAAGTTCATGAATCTGGTGGTTATGGGTCCAGAGGATATGCATATGACTGGAAAAGAGAGGAAGCAAATAAAAACCTCCTGCGGACCCACACAACTGCTGTTTCCTCCAGGATGCTTTACCAGCTGGCACAGAAACCATTTTCTCCAAAAAAATATTTCTCTATAGATCGTGTATTCAGAAATGAAGCAGTTGATCGAACACATCTTGCTGAGTTCCACCAGATAGAAGGTATGNGAGCTAGCCTTGTATGCGATCGAGGACTCACTCTCTGTGACTTAATAGGAGTTCTACATGATTTCTTCTCACGCTTAGGCATGACCAAGCTGAAGTTCAAACCTGCTTACAATCCATACACAGAACCTAGCATGGAGATTTTCAGTTATCATGAAGGCTTTAAAAAATGGGTAGAGATAGGAAACTCTGGCATGTTTAGACCTGAAATGTTGCGGCCGATGGGACTTCCTGAAGATGTCCAAGTTATTGCATGGGGCCTTTCCCTTGAAAGGCCAACGATGATACTATATGGGATAGATAACATCAGGGATCTCTTTGGACCCAAGGTGGATCTTGGTCTTATAAAGAAAAATCCAATATGTCGTCTTGGAATTGACTAAAATGATCCATTCATGCATGTCTAATGTATTTCTTGTCATTCATATTTTTTTTCTTCTTCTCTCATGTCGAACAGTACATGTGGGTGGATTAGTTCAATTTCTGTATGAAGAATTTTGACATGGAAGAAAAAGTACGCCCTCATTTAAAGGTACCTTGACTTNTGTTAATATCATTTTTCTTTTGGTTTGGAAAAATTAATGACGTGGGAAAGTTACTCCATTGCAATTTCTTTTGGTTTGTAAAATTTTATGATAGTCACACTCCAAGAACGGCATGTGATAAGCATCAGCTATGAATATGATTTACATACGATCATATCTTTACCAATTGATTTTCCTGCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01069	32207	39033	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01889	FARSA, pheS	EC:6.1.1.20	Aminoacyl-tRNA biosynthesis	map00970
			Aminoacyl-tRNA biosynthesis	map00970
			Aminoacyl-tRNA biosynthesis	map00970
			Aminoacyl-tRNA biosynthesis	map00970
			Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process

GO:0006418 tRNA aminoacylation for protein translation

GO:0043039 tRNA aminoacylation

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0000049 tRNA binding

GO:0004812 aminoacyl-tRNA ligase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001069s00022467.3	PF01409.15	tRNA-synt_2d	373	550	1.20E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.429
SRR1783600	control	12.193
SRR1783602	moderate drought stress	15.871
SRR1811619	moderate drought stress	15.121

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.139
DRR006520	Root Summer glycyrrhizin high producing strain	14.935
DRR006521	Root Winter glycyrrhizin high producing strain	14.756
DRR006522	Root Winter glycyrrhizin high producing strain	14.330
DRR006523	Root Summer glycyrrhizin low producing strain	15.927
DRR006524	Root Summer glycyrrhizin low producing strain	15.998
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.098
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.276

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.211
SRR2868004	Drought Stress (root)	17.701
SRR2967015	Control (root)	17.227

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.882
SRR9715740	Leaf	8.912
SRR9715741	Leaf	10.269
SRR9715739	Root	2.727
SRR9715742	Root	10.935
SRR9715743	Root	9.212

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.078
SRR8749028	MeJA induced 9h	12.954
SRR8749029	MeJA induced 9h	11.985
SRR8749030	Uninduced	9.756
SRR8749031	Uninduced	9.595
SRR8749032	Uninduced	10.043

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.400
SRR8400027	Control - Root	30.119