Gene detail

Gene detail information of Glyur001069s00022464.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G39280.2	4.00E-77	phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative
NR	XP_004507443.1	1.71E-112	PREDICTED: probable phenylalanine--tRNA ligase alpha subunit-like [Cicer arietinum]
COG	YP_006923659.1	4.00E-15	phenylalanyl-tRNA synthetase subunit alpha [Methanolobus psychrophilus R15]
Swissprot	tr\|Q9T034\|SYFA_ARATH	1.00E-92	Probable phenylalanine--tRNA ligase alpha subunit
trEMBL	tr\|C6TG24\|C6TG24_SOYBN	2.00E-111	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU20776.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01069	18037	20912	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01889	FARSA, pheS	EC:6.1.1.20	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process
GO:0043039 tRNA aminoacylation

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0000049 tRNA binding

GO:0004812 aminoacyl-tRNA ligase activity

GO:0005524 ATP binding

"

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001069s00022464.1	PF01409.15	tRNA-synt_2d	194	232	2.40E-10

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	0.983
SRR1783600	control	0.940
SRR1783602	moderate drought stress	0.961
SRR1811619	moderate drought stress	0.941

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.305
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.322
DRR006522	Root Winter glycyrrhizin high producing strain	0.306
DRR006523	Root Summer glycyrrhizin low producing strain	3.176
DRR006524	Root Summer glycyrrhizin low producing strain	2.655
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.261
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.130
SRR2868004	Drought Stress (root)	0.030
SRR2967015	Control (root)	0.000

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.519
SRR9715740	Leaf	0.256
SRR9715741	Leaf	0.487
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.167
SRR8749028	MeJA induced 9h	14.739
SRR8749029	MeJA induced 9h	14.337
SRR8749030	Uninduced	2.037
SRR8749031	Uninduced	4.005
SRR8749032	Uninduced	5.111

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.169
SRR8400027	Control - Root	0.092