Gene detail information of Glyur001068s00035971 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G11460.1 | 5.00E-33 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_004494044.1 | 3.82E-54 | PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460-like [Cicer arietinum] |
| Swissprot | tr|Q9CAY1|PP223_ARATH | 4.00E-38 | Putative pentatricopeptide repeat-containing protein At3g11460 |
| trEMBL | tr|I1L9E7|I1L9E7_SOYBN | 1.00E-51 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G08580.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01068 | 79667 | 79975 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001068s00035971.1 | PF14432.1 | DYW_deaminase | 17 | 92 | 4.20E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.862 |
| SRR1783600 | control | 0.957 |
| SRR1783602 | moderate drought stress | 0.986 |
| SRR1811619 | moderate drought stress | 1.952 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.351 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.967 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.352 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.826 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.768 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.383 |
| SRR2868004 | Drought Stress (root) | 1.471 |
| SRR2967015 | Control (root) | 2.651 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.667 |
| SRR9715740 | Leaf | 1.008 |
| SRR9715741 | Leaf | 0.889 |
| SRR9715739 | Root | 0.294 |
| SRR9715742 | Root | 1.835 |
| SRR9715743 | Root | 2.356 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.433 |
| SRR8749028 | MeJA induced 9h | 0.315 |
| SRR8749029 | MeJA induced 9h | 0.173 |
| SRR8749030 | Uninduced | 0.398 |
| SRR8749031 | Uninduced | 0.119 |
| SRR8749032 | Uninduced | 0.062 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.397 |
| SRR8400027 | Control - Root | 2.325 |