Gene detail

Gene detail information of Glyur001068s00035969.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G11470.1	6.00E-77	4'-phosphopantetheinyl transferase superfamily
NR	KEH42009.1	5.36E-172	4'-phosphopantetheinyl transferase family protein [Medicago truncatula]
COG	YP_008152537.1	1.00E-38	4-phosphopantetheinyl transferase [Sorangium cellulosum So0157-2]
trEMBL	tr\|A0A072VJ05\|A0A072VJ05_MEDTR	2.00E-172	4'-phosphopantetheinyl transferase family protein {ECO:0000313\|EMBL:KEH42009.1}

Sequence

Transcript Sequence

>Glyur001068s00035969.1
ATGAATACCTACAGTCCTACACCTCCACCGATTTTTTTCCAACTAAAATCCCATTTATACCCCTTATCTCCCCCTCATTCAAACTCACATCGCAGATCACACCCCCTTTTCGACAACCACCGTCGACGAGACCCATTGCAGCCTCCGACACCGTCGTCGGTTCTTCTTCCGTTCGCAGCTTCGTCTTCCTCGCCCTCGTTCTCAAGAATCGCAGGAACTGATTTTGAAGACAATAATACTAGGTATGGTTGGGTCCTGAGTATGCGTGAGTTCAATGCGTTACAACAAAGCACCATTAACGATGAAGATATATTGCTTTGGAAGGAATCTCATCACTGCATCATCACCCTCCTTGTCTCCTGTGCAACTTCCCGCACAAAATTTAGGGAAGCACATATTTGGTATGTTTTGCCTGATGAGGTGAAGTGCACAAACCTATTGAACCGATATTTTGAAATTCTATCACCTTGTGAGAAAGAAAATATATTTCGCATGCATGGGGAAGAGCTAAAAAAGAGAGCACTCCTAGCTCGCGCACTGGTTCGCACGACATTAGCAAGATACCAGATGAATTGTCAGATTGATCCAAAATCCTTGAAGTTTAGGAAGAACAATTATGGCAAGCCTGAGGTAGACTGGCAATATGATGATGACGGGAGCCTACCACCGCTGCATTTTAATATCTCTCACACTTCATCTTTGTTAGCTTGCGGAGTAACTGTGGGCTCACCTATTGGTATTGATGTGGAAGAGAAGCAAAGGAGGTTAAAGAATGATATTTTAGCCTTCGCACGACGATATTTTTCTCCCCATGAAATAGAAATGCTGACTCACATTGTAGACCCTGAGCTTCGGCGTCAGGAGTTTGTAAAACTATGGACTCTAAAGGAGTCATATGTAAAAGCAATAGGAAGAGGCTTCTCAGCGTCACCTTTTAAGACTTTTACCGTTCGATTAAGAGACCAAATGAAAGGAGGCATCCAATTCCCACCTCATATTATTTCTAAGAATCTCTCAAGCAATTGGCATTTTGTGCTTCTGGAGTTGGCTGGTTCTCATTATGCTGCTGTTTGCATTGAGCAGGACAGCATCAATGCAGGCAAAGGGAGCATTATTCCAGTAAATCTGACACTAAGGAAAACAATCCCATTTGTTGGAGATGAATGTGTTTCTGGAACTGACACTGCTGTAGTGATTGGTGGCTTGGCTAGACTGTTNGTGGTTGATTAGTGGTTCATTCTCTAATAAAATGAAAGCTTCTCCCACAGCTTTACATTTTGCCTTCCTTTTTAAGCATTTCATTGATCTAATTTATTTTAGAGCTCTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01068	67247	72556	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K06133	LYS5, acpT	EC:2.7.8.-	Pantothenate and CoA biosynthesis	map00770

Gene Ontology

molecular_function

GO:0000287 magnesium ion binding

GO:0008897 holo-[acyl-carrier-protein] synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001068s00035969.1	PF01648.15	ACPS	244	357	2.10E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.932
SRR1783600	control	7.367
SRR1783602	moderate drought stress	6.861
SRR1811619	moderate drought stress	6.873

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.246
DRR006520	Root Summer glycyrrhizin high producing strain	12.408
DRR006521	Root Winter glycyrrhizin high producing strain	13.331
DRR006522	Root Winter glycyrrhizin high producing strain	13.011
DRR006523	Root Summer glycyrrhizin low producing strain	9.047
DRR006524	Root Summer glycyrrhizin low producing strain	9.613
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.491
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.340

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.200
SRR2868004	Drought Stress (root)	14.249
SRR2967015	Control (root)	14.222

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.294
SRR9715740	Leaf	23.134
SRR9715741	Leaf	15.812
SRR9715739	Root	2.096
SRR9715742	Root	5.740
SRR9715743	Root	3.454

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.758
SRR8749028	MeJA induced 9h	12.752
SRR8749029	MeJA induced 9h	7.782
SRR8749030	Uninduced	10.517
SRR8749031	Uninduced	6.586
SRR8749032	Uninduced	5.772

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.179
SRR8400027	Control - Root	12.738