Gene detail

Gene detail information of Glyur001067s00029146

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G35350.1	poltergeist like 1
NR	XP_004509008.1	PREDICTED: protein phosphatase 2C 29-like isoform X1 [Cicer arietinum]
Swissprot	tr\|O82302\|P2C29_ARATH	Protein phosphatase 2C 29
trEMBL	tr\|G7JGI0\|G7JGI0_MEDTR	Protein phosphatase 2C family protein {ECO:0000313\|EMBL:AES90833.2}

Sequence

Transcript Sequence

>Glyur001067s00029146.1
ATGGGGAGTGGACTATCGAGCCTGTGTTCGTGTCTGGAACCGGTGAACCGGACNAAGCGAACCGAACAGCAGCAGCAAGACGTGATATTCACAGCCACCGACCCACTGGATGAAACCCTAGGCCACTCCTTCTGCTACGTCAGATCCTCAGCACGCTTCCTCTCCCCAACCCACTCCGATCGCTTCCTCTCCCCTTCCACCTCCCTCCGCTTTTCCCCCTCCCACGAACCCCTCCCCAGGACCCGACAACCCGATTTNCCCGAAACCGCCTTCAAGGCCATCTCCGGCGCCTCCGTCAGCGCCAACAGCTCCGTCCCCAAAACCGTTCTTCAGCTAGACGACGACCCCGCCGCCGCCGATTCCGCCGCCACCAAGGGCAGCATCCTCAATGGCTTCGAGAGTACCTCGTCGTTTTGCGCTCTTCCACTCCAGCCTGTTCCCAGGGGTGGTGAGCTCTTCGAGGGGAGTGGATTCTTCCTCTCCGGCCCAATTGAGAGCGGCGCACACTCCGGACCAATAAACCCCGGCGCCGGCGCCGATGGAGGCGTCTCCGGCGGCGGCCGAGAGGTTCCCTTCTCGGCGCCGCTGGGCGGGATGTACCCGAGGAGAAAGAAGGGCGTTTCGGGGTTCCGGAAGGCGTTNCAGCGGAAGGTGTCGGAGAAGAAGCGGCCGTGGGTGGTGCCGGTGCTGAACTTCGTCGGGAGGAAGGATGTTCCGGCTGGCGAGGCGAAGCCAAAGCCTCTTCCGGAGGCTGCGGCGAAGAGTGAGAGCAATGTGCAGTGGGCGCTGGGGAAGGCCGGTGAGGACCGTGTCCATGTAGTGGTATCAGAGGAGCAAGGGTGGTTGTTCGTTGGGATTTACGACGGTTTCAACGGCCCCGATGCGCCGGAGTTTCTGATGGGTAACCTGTACCGTGCAGTTCACAATGAGCTTCAGGGTTTGTTCTGGGAAGCTGAAGAAGAAGAAGCACGGGAGAGTAATCAAGCAGCCACAGGCCAGAGTGTTGAGCTGAAAGTAGAAGATTCTAGTTCTGGTTCTGCGCAGATGGTAAATGCTGAAACCAGAACGGGAACCGGAACGGAGAGTAAACGGCGTAGGCTGTGGGAGTTTCTGGCTGAAGACCCGGAAGACGGGCTTGATCTTTCGGGGTCTGACAGGTTCGCGTTTTCCGTTGATGACGCGCTCAGCGTTAGTAATGCTAATGCGGGTTCCGCGGTTAGTAGACGGTGGCTGTTGCTGTCGAAACTGAAGCACGGTTTGTCGAAGCACACCAAGGAGGGTCATGCTCATACTCACGGCAGGAAGTTGTTGCCGTGGAGTTTGGGGACGGGGGAGGAGGAGAAAGAAGAGAAGGTCGGGGTGGTGGAGGAAGAAAACAAGCCTCCTTCTGGTTCTGGCGGTGGTAGTGGTGGGAGGAGGCGGAAAGTGGGTCCTGTGGATCATGATTTGGTTTTGAATGCACTGTCTCGGGCGCTTCAAGTCACGGAGCTTGCGTATTTGGACATGACGGATAAGCTTCTGGATACTAATCCTGAACTTGCTTTGATGGGCTCGTGTCTCTTGGTTGTTTTGATGAGGGATGAGGATGTGTATGTGATGAATGTTGGGGATAGCCGTGCTATTGTTGCGCACTATGAGNCCAAGGAGAAGGAGGATAATACTTGTAATGTGGAATCTGCAAGCAAGGGAGATGTTGATGATGTTGGTGTTGGTTCCAGCACCGAGAGCATTGTTGAGGAGTCCTTAGCTTTAGATCAAAATCAAACTCAAACGGAAAGTGCGATCAAGGTGGGGAATCCCAATCAGGGTGCTGCTCAAGAAATGAGGTTGGTGGCATTGCAGCTGTCCACTGACCACAGCACCAGCATTGAAGAAGAAGTCATTAGGATTAAAAATGAGCATCCCGATGACACTCATTGTATAGTCAATGATAGAGTTAAAGGTCGTCTTAAGCCGAAGTTGAACGATGCAGTACTAGAAATGTTTCGTAATGAATATATTGGCACTGCTCCATATATATCCTGCTTTCCTTCACTACGTCACCATAGATTATGCCCAAGAGATCAGTTCCTGATCCTCTCATCTGATGGTTTATATCAATATCTAAACAATGAAGAAGTGGTTTCTCAAGTTGAGAGCTTCATGGAAAAATTTCCAGAGGGAGATCCGGCCCAACATTTAATAGAAGAGCTCCTCCTCCGTGCAGCCAAGAAGGCTGGAATGGATTTTCATGAATTACTGGATATCCCACAAGGAGATCGGAGGAAGTATCATGATGATGTTACAGTTATGGTGATATCACTTGAAGGAAGAATCTGGAAATCGTCAGGGAAGTATCTGTGAGGCCTTTAACTTGCTGTTGGCTCTATACATGTGATAACATTTTTTCACCTGAGATTGCCCCAAAGATGATGCCATAGTTTCACAGCTGATCCATTTTTCATGGATCTGGGTTTTGTTTTTCCTGGTCTTTACCACAAAAAGTTATCACTGAGGAATCTCAGATTTTAATGGCAAGTGGCAANTGTTAGAGCTCTTATGCAGAATTAAAGACGCGGAATGCAGTTTGGTATCACCTAAGAATGGACATTGTAGATGGGCTTTTGGGATTTTCTCTAAGAGTGGGAAAAAAAAAGGAAGTACAGCCATTTAAACTGTTTCTTTTTCCATTCGCTATTTCTGTTCTCCCTCCCTATTTTTTGCAGTTATAGAGATGAAAAATGATAGAAATTTTGCATAGCGAAGGCCCTTTCTATTTATTTTCTTTTTTATTTATTTTTCTGGCAGAGCCAAGGAAAATGTGGGTGTATATTGGTGGGGATACAAGTGTACTGATTGAACTGGAGCAGTCCTTAGTCAGAAATGANAGTCTGTAACTGAGGGTGGATTTCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01067	47568	52894	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001067s00029146.1	PF00481.16	PP2C	491	544	9.00E-05
Glyur001067s00029146.1	PF00481.16	PP2C	614	738	2.10E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.197
SRR1783600	control	9.200
SRR1783602	moderate drought stress	10.264
SRR1811619	moderate drought stress	10.007

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.883
DRR006520	Root Summer glycyrrhizin high producing strain	6.736
DRR006521	Root Winter glycyrrhizin high producing strain	6.786
DRR006522	Root Winter glycyrrhizin high producing strain	6.491
DRR006523	Root Summer glycyrrhizin low producing strain	9.390
DRR006524	Root Summer glycyrrhizin low producing strain	9.597
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.816
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.872

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.927
SRR2868004	Drought Stress (root)	20.101
SRR2967015	Control (root)	23.704

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.383
SRR9715740	Leaf	4.325
SRR9715741	Leaf	5.712
SRR9715739	Root	7.649
SRR9715742	Root	14.654
SRR9715743	Root	13.168

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	40.833
SRR8749028	MeJA induced 9h	53.938
SRR8749029	MeJA induced 9h	48.732
SRR8749030	Uninduced	9.743
SRR8749031	Uninduced	10.481
SRR8749032	Uninduced	15.445

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.160
SRR8400027	Control - Root	17.603