Gene detail

Gene detail information of Glyur001067s00029145

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G46580.1	pentatricopeptide (PPR) repeat-containing protein
NR	XP_004509010.1	PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic-like [Cicer arietinum]
Swissprot	tr\|Q9LS25\|PP420_ARATH	Pentatricopeptide repeat-containing protein At5g46580, chloroplastic (Precursor)
trEMBL	tr\|G7JGI1\|G7JGI1_MEDTR	Pentatricopeptide (PPR) repeat protein {ECO:0000313\|EMBL:AES90834.1}

Sequence

Transcript Sequence

>Glyur001067s00029145.1
ATGGCCGCTCCTCTTTCTACTATGGTGGATATCTACTTTGCAGACACCAAGAGAACAAGGTTCGCCATCACCACTCCTTCTACGCTGAAAACTCGTAGAAAATTTGCCACCTTTTCCAAATCCACTCCAGAAGCTCCTCTCACGCCACCAATTTCAGACAACACCACCACCTCCAAGAAGAACTCTTCTTTATCGGAACAACTCTCGTCACTCGCCAACACCACGTTATCCAATGCTTCAGAAGACCAACCCCGTATCTTATCAAAGCCAAAACCCACATGGGTCAACCCCACNAAGGCCAAGCGCCCTGTCCTCTCACACCAGAGACAGAAACGCACTTCTTTCTCACACAATCCAAAATTGAGAGACTTCCAGCGATTCGCGCGGAGACTTAACGACTGTGATGTCTCCTCAGAGGCCGATTTCATGGCTTGTCTTGAAGAAATCCCAAGCCCACTTACACGGGAAAACGCACTCTTGTTGCTCAATAGCCTCAAGCCATGGCAGAAGACCCATACGTTTCTCAATTGGATCAAGACCCGGAATTTGCTTCCCATGGAAACCATATTCTACAATGTCACAATGAAGTCTTTGAGGTTTGGGAGACAGTTTCAGCTGATAGAAGACCTTGCCCACCAGATGGTTGATAGTGGGGTTGAACTGGACAACATCACTTATTCCACCATCATAAGCTGTGCCAAGAAGTGCAACCTGTTTGATAAGGCTGTGCATTGGTTTGAGAGGATGTACAAGACCGGTTTGATGCCGGATGAGGTTACTTACTCAGCCATCTTAGATGTTTATGCTAGGTTAGGTAAGGTTGAAGAGGTGGTGAATTTGTATGAGAGAGGTAGAGCAACTGGGTGGAAGCCTGACCCTATCACGTTCTCTGTGTTGGGGAAGATGTTTGGGGAGGCTGGGGACTATGATGGTATTAGGTATCTTTTGTATGAGATGAAGTCGCTTGGGGTGCAGCCTAATTTAGTTGTGTATAANACCTTGTTGGATGCAATGGGGAAGGCCGGGAAGCCGGGGTTTGCAAGGAGCCTGTTTGAGGAAATGATTGAGTCGGGGATAGCCCCGAATGAGAAGACTCTAACCGCGGTGATTAAGATATATGGAAAGGCCAGGTGGTCTAGAGATGCTCTGGAACTATGGAAACGGATGAAGGAAAATGGATGGCCTATGGATTTTATTCTGTATAATACATTGTTGAATATGTGTGCGGATGTTGGGTTGGTGGAGGAGGCTGAAGCTCTGTTTAGGGACATGAAAGAGTCTGAGCACTGCAAGCCAGATAGTTGGAGTTACACAGCAATGCTCAACATATATGGGAGCCAAGGAGATGTGGGCAAGGCAATGAAATTGTTTGAAGAGATGTCTAAGTTAGGTATTGAACTCAACGTGATGGGGAGTACTTGTTTGATTCAGTGCTTGGGAAAGGCNATGGAAATTGATGATTTGGTTAGAGTTTTTGACATTTCGGTTGAGAGAGGAGTTAAGCCGGATGATAGGCTATGCGGTTGCTTGTTATCTGTTNTGTCTCTGTCTCAGGGTAGCAAGGATGAGGAAAAAGTCCTTGCTTGTTTGCAGCAAGCTAACCCAAAATTGGTTGCCTTTATTCAATTGATTGTGGATGAGGAAACTAGTTTTGAGGCTGTCAAGGAAGAGTTCAAGGGTATCATGAGTAATGCTGCGGTTGAAGTGAGAAGACCCTTTTGTAACTGCTTGATTGACATATGCAGAAACAAGGATCTCCTAGAGAGAGCCCACGAGCTACTCTACTTGGGGACTTTATATGGATTATACCCAGGTTTGCACAACAAGACACACAATGAATGGTGTCTAGACGTTCGATCATTGTCAGTTGGTGCGGCTCTTACTGCACTTGAAGAGTGGATGTGGACACTCACCAAGATTGTTAAGCGGGAGGAGGCACTGCCAGAGTTATTCCTAGCCCAAACTGGTACTGGTGCTCACAAGTTTGCCCAAGGACTGAATATTTCTTTTGCCTCTCATGTGAGAAAACTGGCTGCTCCATTTAGGCAGAGTGAGGACAAAGTTGGCTGTTTTATTGCAACTAGAGAGGATTTAGTCTCTTGGGTGCAATCAAAGTCTCCTTCAGCTGCTATTGCAGCATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01067	43236	45377	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001067s00029145.1	PF01535.15	PPR	224	251	0.0031
Glyur001067s00029145.1	PF13041.1	PPR_2	256	300	1.20E-07
Glyur001067s00029145.1	PF13041.1	PPR_2	326	372	9.60E-10
Glyur001067s00029145.1	PF13041.1	PPR_2	399	442	3.40E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.902
SRR1783600	control	8.730
SRR1783602	moderate drought stress	10.984
SRR1811619	moderate drought stress	10.857

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.189
DRR006520	Root Summer glycyrrhizin high producing strain	8.081
DRR006521	Root Winter glycyrrhizin high producing strain	7.456
DRR006522	Root Winter glycyrrhizin high producing strain	7.367
DRR006523	Root Summer glycyrrhizin low producing strain	5.857
DRR006524	Root Summer glycyrrhizin low producing strain	5.933
DRR006525	Leaf Summer glycyrrhizin high producing strain	46.861
DRR006526	Leaf Summer glycyrrhizin high producing strain	47.174

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.397
SRR2868004	Drought Stress (root)	15.085
SRR2967015	Control (root)	17.221

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.111
SRR9715740	Leaf	34.364
SRR9715741	Leaf	22.383
SRR9715739	Root	9.706
SRR9715742	Root	11.494
SRR9715743	Root	12.258

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.571
SRR8749028	MeJA induced 9h	10.922
SRR8749029	MeJA induced 9h	3.387
SRR8749030	Uninduced	1.454
SRR8749031	Uninduced	0.419
SRR8749032	Uninduced	0.475

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.081
SRR8400027	Control - Root	9.891