Gene detail

Gene detail information of Glyur001067s00029144.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G46590.1	9.00E-27	NAC domain containing protein 96
NR	XP_003549977.1	3.59E-41	PREDICTED: NAC domain-containing protein 78-like [Glycine max]
Swissprot	tr\|A4VCM0\|NAC45_ARATH	1.00E-20	NAC domain-containing protein 45 {ECO:0000312\|EMBL:AEE73912.1}
trEMBL	tr\|K7MLU0\|K7MLU0_SOYBN	1.00E-41	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G16500.2}

Sequence

Transcript Sequence

>Glyur001067s00029144.1
CTAGCACTAAAACACATCCATCACCATCACACACACACGCTCAATTCCAATTCCAGTGTTGTTCTGTACTCGTTTATTCAAAATCCTGGGCTTTGATTAGCTCCCCCTCTTTGATAGAATTCTGAGTTGGTTGTTTAGTAACTTCTGAGAATTGCTCAGTTAATTTAATTCCATTTTTTTTTGTTCCAGCTTTTAAGGAACTTGAATATTAAGGGGAGGTGGTGGGGTTGGGGTAAGATAACTGCCATAAGACACATCTAATTTCTTTAATACGATGATCCTTGCATTCAGTGGATGCAGTCTGTGGAAGTTTCACTTGACTCTTGACAAAAAATCTATTGTAGACAAAAGCTTCTATTTTTGGATCTTCCATATCTTTACTAGATATAGTCTTGGTACTTAGCAAAGTAATTCTCATTAATATATCCTGGAAACTAGTACTTTCTTTATTTGGGGTTTGTTTTTGTTCTGCTGCCTATAGCTTTGGTTACTTCTTTCTTCCTCAGTTTCACAATCACAATTAACATAGCAACAACATAATTATGGGAGGGGCATCACTGCCACCAGGTTTTCGTTTCCATCCAACTGATGAAGAACTAGTGGGATACTACCTCAAAAGAAAAGTAGAGGGACTTGACATTGAGCTTGAAGTTATCCCCNTTATTGATTTCTACAAATACGATCCATGGGAATTGCCCGAAATCGTTCATGCCAAGACGAGATTTAGAATGGTTTTTCTTTTGTCCAAGGGATCGCAAGTACCCAAATGGGGTGGTTTTGCTTTGTGCCGAGTTATTAAAAAGAATGAGAAGTCACTTGATTGGAAGGGAGAAGACAAGGGTAAGAGGGCTGCAAGAAGTTCCATCCATGGGAGTGANACTTCAATGAGATTCTCCAACAATCACTTCAGCATATCTGGTGATGTTTCCTCTCAAGCAAGTCAACTGAATAATGAGAGTCGTTACTCAAGCCCTGTTACTTCTCCAAACAATGTGGCTCCNATTACTGAGTTTAACCAAGCTTCCATAGAAACCAATCCTCACAGCTGCTGGATCTCCCCTGATATGATTCTTGATTCTTCAAAGGCATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01067	35030	37204	-

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001067s00029144.1	PF02365.10	NAM	6	117	6.80E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.912
SRR1783600	control	13.073
SRR1783602	moderate drought stress	5.615
SRR1811619	moderate drought stress	5.331

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.422
DRR006520	Root Summer glycyrrhizin high producing strain	3.125
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.020
DRR006523	Root Summer glycyrrhizin low producing strain	4.453
DRR006524	Root Summer glycyrrhizin low producing strain	4.060
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.436
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.387

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.678
SRR2868004	Drought Stress (root)	5.387
SRR2967015	Control (root)	6.883

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.962
SRR9715740	Leaf	4.122
SRR9715741	Leaf	6.655
SRR9715739	Root	1.388
SRR9715742	Root	4.825
SRR9715743	Root	3.979

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.128
SRR8749028	MeJA induced 9h	0.454
SRR8749029	MeJA induced 9h	0.522
SRR8749030	Uninduced	0.673
SRR8749031	Uninduced	0.594
SRR8749032	Uninduced	0.064

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.303
SRR8400027	Control - Root	8.443