Gene detail information of Glyur001067s00029140 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G35470.1 | 3.00E-126 | plant intracellular ras group-related LRR 4 |
| NR | XP_003549980.1 | 0 | PREDICTED: plant intracellular Ras-group-related LRR protein 5-like [Glycine max] |
| COG | YP_007121991.1 | 3.00E-51 | hypothetical protein Mic7113_2802 [Microcoleus sp. PCC 7113] |
| Swissprot | tr|Q8S7M7|PIRL5_ORYSJ | 2.00E-180 | Plant intracellular Ras-group-related LRR protein 5 |
| trEMBL | tr|I1MVE1|I1MVE1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G16570.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01067 | 16404 | 18920 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001067s00029140.1 | PF13855.1 | LRR_8 | 236 | 291 | 2.00E-08 |
| Glyur001067s00029140.1 | PF12799.2 | LRR_4 | 302 | 341 | 3.40E-07 |
| Glyur001067s00029140.1 | PF13855.1 | LRR_8 | 348 | 406 | 1.70E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.011 |
| SRR1783600 | control | 3.995 |
| SRR1783602 | moderate drought stress | 5.907 |
| SRR1811619 | moderate drought stress | 5.811 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.238 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.127 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 51.488 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 49.831 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 33.485 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 32.782 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.357 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.257 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.250 |
| SRR2868004 | Drought Stress (root) | 26.203 |
| SRR2967015 | Control (root) | 42.304 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.978 |
| SRR9715740 | Leaf | 2.176 |
| SRR9715741 | Leaf | 3.478 |
| SRR9715739 | Root | 0.666 |
| SRR9715742 | Root | 2.085 |
| SRR9715743 | Root | 2.529 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.212 |
| SRR8749028 | MeJA induced 9h | 39.865 |
| SRR8749029 | MeJA induced 9h | 28.863 |
| SRR8749030 | Uninduced | 18.022 |
| SRR8749031 | Uninduced | 71.496 |
| SRR8749032 | Uninduced | 53.239 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.327 |
| SRR8400027 | Control - Root | 2.751 |