Gene detail

Gene detail information of Glyur001066s00037419

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G76890.2	3.00E-66	Duplicated homeodomain-like superfamily protein
NR	XP_004496472.1	0	PREDICTED: trihelix transcription factor GT-2-like [Cicer arietinum]
Swissprot	tr\|Q39117\|TGT2_ARATH	1.00E-117	Trihelix transcription factor GT-2
trEMBL	tr\|G7ICY9\|G7ICY9_MEDTR	0	Myb/SANT-like DNA-binding domain protein {ECO:0000313\|EMBL:AES62363.1}

Sequence

Transcript Sequence

>Glyur001066s00037419.1
ATTCAACTTGTTTTTCTGATCATATATACATATATATATCTCTCTCTGTATATTCCCTTTTTTTCTCAAGCTGTAATTGCTTTGGTAGGGACATCTCTCTCTCTCTCTCTCTCTCTTAATCTCAATCTCTATGCAGCTGGAAGACGCAACAGTGTTGGAGAGCTCCTCCGGGGAGGCTTTGCCGGCGGTGCATGATGGTGCCAACGGTGGCGGCGATGTGATTATGGAAGAGAAAGGAAGGGAGGGTGGTGGTGGTAGTGGTGGTGAAGAAGGTGATGACAAGATCAACAACATTAACGGTGGTGGTGGAAACCGGTGGCCCCGCCAAGAAACTTTGGCTCTCTTGAAGATAAGGTCGGATATGGATGGTGTGTTTCGAGATTCAAGTCTTAAGGGTCCACTCTGGGAAGAAGTTTCAAGAACCAAAGAGAGCAGAAGTGGGAAATCAGAAGGGAAAACCTACAGGTTCTTTGATCAATTACAAGCCCTTGAGAACCAATTCACTCTCTCCTCTTACCCTCCTCCAAAACCACAACCTCCTCCTCCTAATTTGGCAATACCATTTCCAACAACAACAAGGCCTAGTCATCATGACAACAACACTACTACTACAGCAACATTAATCTCTCATGTCACCACCACAAACACTACTGTTCCATCCACAAACCCTACCACNCTCATTTCACCACCACCACCAACACCAACACCAACCGATGCCAACAACAATGTCCCATATTCCTTGCCCAACATGAACCTATTCTCAACCACAACAACCTCAACCTCATCCTCCACCGCTTCAGACGAAGACTTGGAAGAGAAGTACAGAAAGAAGAGGAAATGGAAGGACTACTTCAGGAGGCTGACAAGGCAAGTGTTGGCAAAACAAGAGGAGATGCAGAAGAGGTTTCTAGAAGCCATAGACAAAAGGGAGAGGGAACACATGGCTCAACAAGACGCTTGGCGAATGCAAGAGATGGCACGAATCAATAGAGAACACGAACTCCTCATCCAAGAAAGATCAACAGCAGCAGCAAAAAACGCAGCAGTCATTGCATTCCTTCAAAAACTCTCTGGCCAACAAAACCCCACAACACAACAACCACCACAACCGCCACAGCAACAACAACCACCGCCGCCGGAGCCATCGCCGCCACCGACGGCGGTATCAGTAGTACAAACAATTACACAACATCAACTGATCATGCCACATAGCAACAACAATGGTGAAATATTCCAGAATGTGAATACTAATGGTCATCATCATCATAGTGGTGGTAGTGGTGGTGTTTCTTCTTCTAGGTGGCCACAAGCTGAAGTTCATGCGCTGATAAGGCTGAGAACAAGTCTTGAACCAAAGTATCAAGAGAATGGACCGAAAGCTCCATTGTGGGAGGATATATCAGCTGGGATGCAGAGACTTGGGTATAACAGGAGTTCAAAGAGGTGCAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAAATGAAGGAGAGTAACAAGCAAAGGCGTGAGGATAGTAAGACATGTCCCTATTTTCACGAACTCGAAGCACTTTACAAAGAGAAGGGAAAAACTTTAACACAGAACCCCTTTGGTGGTGGTGCTTTGTTCCAAAGCAATATGAAGGCAAATGAGATGATGGAACCATTGATGGTGCAACCTGAACAGCAATGGAGACCTCCCCCTCAATATGAAGAGGGTGTTGAGAAGAAGAAGAATAATGAAGATGCAAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGCGATGATAACGATGAAGAAGGAGAAGAGGGGGATAGCAATGGCATGGAAGTTATGAGGGTTGGGACAAATGAAGTTTGTTCAGTGGACACGGTTGAATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01066	50378	53165	+

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001066s00037419.1	PF13837.1	Myb_DNA-bind_4	389	476	1.90E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.047
SRR1783600	control	5.931
SRR1783602	moderate drought stress	9.987
SRR1811619	moderate drought stress	9.654

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.177
DRR006520	Root Summer glycyrrhizin high producing strain	10.037
DRR006521	Root Winter glycyrrhizin high producing strain	2.492
DRR006522	Root Winter glycyrrhizin high producing strain	2.190
DRR006523	Root Summer glycyrrhizin low producing strain	12.925
DRR006524	Root Summer glycyrrhizin low producing strain	12.238
DRR006525	Leaf Summer glycyrrhizin high producing strain	71.557
DRR006526	Leaf Summer glycyrrhizin high producing strain	71.182

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	51.989
SRR2868004	Drought Stress (root)	45.270
SRR2967015	Control (root)	47.049

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	38.401
SRR9715740	Leaf	51.081
SRR9715741	Leaf	44.978
SRR9715739	Root	0.288
SRR9715742	Root	3.557
SRR9715743	Root	2.602

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.575
SRR8749028	MeJA induced 9h	8.283
SRR8749029	MeJA induced 9h	10.794
SRR8749030	Uninduced	10.024
SRR8749031	Uninduced	21.590
SRR8749032	Uninduced	6.364

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.647
SRR8400027	Control - Root	15.387