Gene detail information of Glyur001066s00037416.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G76900.2 | 9.00E-163 | tubby like protein 1 |
| NR | XP_003592106.1 | 0 | Tubby-like F-box protein [Medicago truncatula] |
| Swissprot | tr|Q75HX5|TLP8_ORYSJ | 0 | Tubby-like F-box protein 8 |
| trEMBL | tr|G7ICY3|G7ICY3_MEDTR | 0 | Tubby-like F-box protein {ECO:0000256|RuleBase:RU361125} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01066 | 16972 | 19458 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TUB |
| Ubiquitin Family | F-box |
| EAR motif-containing Proteins | TUB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001066s00037416.1 | PF00646.28 | F-box | 53 | 105 | 1.00E-09 |
| Glyur001066s00037416.1 | PF01167.13 | Tub | 117 | 429 | 2.10E-114 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 24.668 |
| SRR1783600 | control | 24.744 |
| SRR1783602 | moderate drought stress | 23.027 |
| SRR1811619 | moderate drought stress | 20.313 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 30.374 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.642 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 22.765 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 21.277 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 68.307 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 70.559 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.789 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.038 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 40.511 |
| SRR2868004 | Drought Stress (root) | 50.583 |
| SRR2967015 | Control (root) | 44.890 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 53.062 |
| SRR9715740 | Leaf | 38.645 |
| SRR9715741 | Leaf | 65.488 |
| SRR9715739 | Root | 27.963 |
| SRR9715742 | Root | 49.750 |
| SRR9715743 | Root | 53.467 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 37.237 |
| SRR8749028 | MeJA induced 9h | 52.247 |
| SRR8749029 | MeJA induced 9h | 60.823 |
| SRR8749030 | Uninduced | 76.221 |
| SRR8749031 | Uninduced | 91.971 |
| SRR8749032 | Uninduced | 87.343 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 33.517 |
| SRR8400027 | Control - Root | 38.464 |