Gene detail information of Glyur001064s00029632.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G32940.1 | 0 | gamma vacuolar processing enzyme |
| NR | NP_001236564.1 | 0 | vacuolar processing enzyme 2 precursor [Glycine max] |
| COG | YP_004254713.1 | 3.00E-16 | Legumain [Odoribacter splanchnicus DSM 220712] |
| Swissprot | tr|P49044|VPE_VICSA | 0 | Vacuolar-processing enzyme (Precursor) |
| trEMBL | tr|I1M8Z5|I1M8Z5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G10620.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01064 | 86619 | 92502 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01369 | LGMN | EC:3.4.22.34 | Lysosome | map04142 |
| Antigen processing and presentation | map04612 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001064s00029632.1 | PF01650.13 | Peptidase_C13 | 55 | 319 | 4.00E-86 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 65.689 |
| SRR1783600 | control | 65.182 |
| SRR1783602 | moderate drought stress | 28.217 |
| SRR1811619 | moderate drought stress | 28.782 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 420.277 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 408.961 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 159.507 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 154.308 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2264.756 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2254.375 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 57.409 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 54.679 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 187.960 |
| SRR2868004 | Drought Stress (root) | 275.277 |
| SRR2967015 | Control (root) | 355.360 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 21.468 |
| SRR9715740 | Leaf | 43.235 |
| SRR9715741 | Leaf | 43.493 |
| SRR9715739 | Root | 34.652 |
| SRR9715742 | Root | 74.962 |
| SRR9715743 | Root | 60.173 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 54.051 |
| SRR8749028 | MeJA induced 9h | 89.010 |
| SRR8749029 | MeJA induced 9h | 65.589 |
| SRR8749030 | Uninduced | 21.112 |
| SRR8749031 | Uninduced | 42.658 |
| SRR8749032 | Uninduced | 53.539 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 110.994 |
| SRR8400027 | Control - Root | 115.013 |