Gene detail

Gene detail information of Glyur001064s00029630

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G26010.1	7.00E-71	Protein phosphatase 2C family protein
NR	AFK42819.1	1.30E-176	unknown [Lotus japonicus]
COG	YP_002521872.1	5.00E-08	serinethreonine phosphatase [Thermomicrobium roseum DSM 5159]
Swissprot	tr\|Q6Z8B9\|P2C12_ORYSJ	1.00E-89	Probable protein phosphatase 2C 12
trEMBL	tr\|I3SRC7\|I3SRC7_LOTJA	5.00E-177	Uncharacterized protein {ECO:0000313\|EMBL:AFK42819.1}

Sequence

Transcript Sequence

>Glyur001064s00029630.1
ATGGGTATCTGCATATCCGTTGCNTCTTCAGAGATTCATCATGGGATCCCTGAAGAAGTTGTTCATGATGAGAATGTGGCAATATTTGAAGCAAACAAGGTCTTACATGGGAATCATGAGAGACTTTGTTCTGTTTACTCTAAACAAGGTTCCAAAGGACTCAACCAAGATGCTGCCTCTCTTCACCAGGGTTTTGGGATGGAAGATGGAGCATTTTGTGGTGTTTATGATGGACATGGAAGGAATGGACACATAGTGAGCAAAATAGTCAACAGTCGTTTGTCTTCACTCATATTGAGCCAAAAGAATGCTCTTGCAGAGACTGAAGCAATAGAAAAGGGTGTTGACAAAAACACCCNAAAACATTTTGATACAGTAGAAGAAGGTGATGGCTCAGTTCCAAAGAATTTTCAGATATGGAAAGAAGCCATTTTTAGTGCTTTCAGGGTGATGGACAAGGAAGTGAAGCTACAACAGAATCTAGACTGCTCTTGTAGTGGAACCACTGCTGTAGTTGTCATAAGACAGGGTGAAGGTCTTGTAATAGCTAATCTGGGTGACTCAAGAGCAATCTTAGGGACAATCTATGATGAAAAATTCAAAGCTATTCAATTGACCACTGATTTGAAGCCTGGATTACCTCTGTGGTTGCCCAATGAGAACTCACCTGGTCTAGCCATGTCACGGGCTTTTGGAGATTTCATACTCAAAGACCATGGTGTTATTGCCATCCCAGATATTTGGTATCGCCCTCTAACATCAAGGGACCAATTTGTTGTTCTTGCAACTGATGGGGTGTGGGATGTACTAAGTAATGATGAGGTTGCATCANTTGTGTGGATGGTACAAACTGAAGAGGAAGCGGCAAGAGCAGTGGTGGAAGCAGCTACAGCTGCATGGGAAAAGAAGTATCCTTCTTCCAAGGTAGATGATTGCACCGTGGTTTGCCTTTTCCTCCAAAAGAGACCACAAAACTTGGGNCACATGAAAAGTGGGAAATTAGGTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01064	58678	62124	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001064s00029630.1	PF00481.16	PP2C	70	298	6.40E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.540
SRR1783600	control	0.431
SRR1783602	moderate drought stress	0.269
SRR1811619	moderate drought stress	0.181

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.458
DRR006520	Root Summer glycyrrhizin high producing strain	0.441
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.110
DRR006524	Root Summer glycyrrhizin low producing strain	0.110
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.092
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.079

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	106.537
SRR2868004	Drought Stress (root)	147.428
SRR2967015	Control (root)	157.683

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.065
SRR9715739	Root	0.000
SRR9715742	Root	0.411
SRR9715743	Root	0.182

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.196
SRR8749028	MeJA induced 9h	0.390
SRR8749029	MeJA induced 9h	0.298
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.002

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.388
SRR8400027	Control - Root	8.426