Gene detail information of Glyur001064s00029626 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G11790.1 | 1.00E-146 | N-MYC downregulated-like 2 |
| NR | XP_004498913.1 | 0 | PREDICTED: pollen-specific protein SF21-like [Cicer arietinum] |
| Swissprot | tr|O23969|SF21_HELAN | 6.00E-162 | Pollen-specific protein SF21 |
| trEMBL | tr|G7IB94|G7IB94_MEDTR | 0 | Pollen-specific SF21-like protein {ECO:0000313|EMBL:AES59278.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01064 | 21572 | 26170 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001064s00029626.1 | PF03096.9 | Ndr | 23 | 307 | 1.10E-107 |
| Glyur001064s00029626.2 | PF03096.9 | Ndr | 17 | 156 | 5.70E-42 |
| Glyur001064s00029626.3 | PF03096.9 | Ndr | 23 | 140 | 1.70E-44 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.812 |
| SRR1783600 | control | 3.862 |
| SRR1783602 | moderate drought stress | 2.860 |
| SRR1811619 | moderate drought stress | 2.883 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.990 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.065 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 37.809 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 36.313 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.587 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.490 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.707 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.778 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.645 |
| SRR2868004 | Drought Stress (root) | 7.226 |
| SRR2967015 | Control (root) | 7.425 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 29.739 |
| SRR9715740 | Leaf | 12.022 |
| SRR9715741 | Leaf | 14.318 |
| SRR9715739 | Root | 2.025 |
| SRR9715742 | Root | 8.115 |
| SRR9715743 | Root | 5.385 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.537 |
| SRR8749028 | MeJA induced 9h | 5.036 |
| SRR8749029 | MeJA induced 9h | 5.546 |
| SRR8749030 | Uninduced | 6.469 |
| SRR8749031 | Uninduced | 5.875 |
| SRR8749032 | Uninduced | 3.758 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.279 |
| SRR8400027 | Control - Root | 18.069 |