Gene detail

Gene detail information of Glyur001063s00030488

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G17920.2	Cobalamin-independent synthase family protein
NR	XP_004489678.1	PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like isoform X1 [Cicer arietinum]
COG	YP_004752198.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase [Collimonas fungivorans Ter331]
Swissprot	tr\|Q42699\|METE_CATRO	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
trEMBL	tr\|V7C2G9\|V7C2G9_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW23490.1}

Sequence

Transcript Sequence

>Glyur001063s00030488.1
TTTCTATCTGCTTCCTTCCTTCAACATCCCAATAAAAGAGAAAGAACTGGTCTCTCTAACCACTCGAAAAAACTGAAAATGGCATCTCATATTGTTGGATACCCTCGCATGGGCCCCAAGAGAGAGCTCAAGTTTGCTCTGGAATCATTCTGGGATGGGAAGAGTAGCGCCGAGGATTTGCAGAAGGTGGCTGCTGATCTCAGGGCATCCATCTGGAAGCAGATGTCCGNTGCCGGGATCAAGTACATCCCCAGCAACACATTCTCATACTATGATCAGGTGCTAGATGCCACTGCCATGCTTGGCACTGTTCCACAGAGATACGGGTGGAATGGCGGCGAGATTGGATTCGATACCTACTTCTCCATGGCCAGGGGTAATGCCTCTGTGCCTGCAATGGAGATGACCAAGTGGTTTGACACCAACTACCACTTCATTGTCCCCGAATTGGGACCTGATGTAAATTTCACTTATGCTTCCCACAAGGCAGTGGATGAGTACAAGGAGGCCAAGGCGCTTGGAGTAGATACAGTTCCAGTCCTCATTGGACCTGTAACCTACTTGTTGCTCTCCAAACCTGCAAAGGACCTTGAATCTCCCAAGTTGCAAGCATTTACTGCAGCATACTCAGAACTTGCTTCTACTTTATCTGGTTTAAATGTTCTTGTTGAGACCTACTTTGCCGACGTTCCTGCTGAGGCATTCAAGACCCTCACAGGTCTGAATGGTGTCACAGCATTCGGATTTGATTTAATCCGTGGAACTAAGACCCTCGATTTGATTAAGGGTGGATTTCCCAGTGGGAAATACTTGTTCGCCGGAGTGGTTGATGGAAGGAACATTTGGGCTAATGATCTTGCTGCTTCTCTCAACACATTAAATAGTCTTGAGGGTATTGTGGGCAAAGATAAACTTGTTGTGTCCACCTCCTGCTCACTTCTTCACACTGCTGTTGATCTTGTGAATGAGACCAAGTTGGATAATGAGATAAAATCATGGCTGGCTTTTGCTGCCCAAAAGATTGTCGAAGTAAATGCATTGGCCAAGGCATTGTCTGGTCAAAAAGATGAGGCCTTCTTCTCTTCTAATGCTGCAGCTCAGGCTTCAAGAAAGTCCTCTCCAAGAGTGACTAATGAGGCTGTTCAGAAGGCNGCTGCTGCATTGAAGGGTTCTGACCATCGCCGTGCCACGAATGTCAGCGCCAGACTGGATGCTCAACAAAAGAAACTCAACCTCCCCGTCCTCCCAACCACCACCATTGGATCCTTCCCTCAGACTGTTGAATTGAGAAGAGTGCGACGTGAATACAAGGCTAACAAGATCTCAGAGGAAGAGTATGTTAAGTTAATTAAAGAGGAAATCCGTAAAGTNGTTGAACTCCAAGAACAGCTTGATATTGATGTCCTGGTACATGGGGAGCCTGAGAGAAATGATATGGTTGAGTACTTTGGTGAGCAGTTGTCAGGCTTTGCCTTCACTGTTAATGGGTGGGTGCAATCTTATGGATCTCGCTGTGTGAAGCCACCGATCATCTATGGCGATGTGAGCCGTCCAAAACCAATGACTGTCTTCTGGTCATCTACAGCTCAGGGCATGACCAAGCGCCCAATGAAGGGAATGCTTACCGGCCCTGTCACCATTCTCAACTGGTCCTTTATAAAAAAAACTATCAAGGATGAAGTAGAAGACCTTGAAAAGGCCAAAAAAAAAGTTATCCAAATTGATGAGGCTGCTTTGAGAGAGGGGTTACCATTGAGGAAGTCAGAGCAAGCTCACTACTTGGACTGGGCAAAAAAAACCTTCAGGATCACCAATATCCACACCCACATGTGCTACTCTAACTTCAATGACATCATCCAATCAATCATTAATATGGATGCCGATGAAAAAAAAATTGAGAACTCTCGTTCCGATGAGAAGCTCCTGTCGAAAAAAAACGAAGGAGTCAAGTATGGAGCCGGAATCGGCCCCGGAAAAAAAAACATTCACTCCCCAAGAATACCACCAACTGAAGAAAAAAAAAAAAGGGTCAACAAGATGCTTGCAGTGCTTGAGACAAACAAAAAAAAGGTCAACCCGGATTGCGGGCTCAAGACCCGCAAGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01063	56549	62534	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00549	metE	EC:2.1.1.14	Biosynthesis of amino acids	map01230
			Cysteine and methionine metabolism	map00270
			Selenocompound metabolism	map00450

Gene Ontology

biological_process

GO:0008652 cellular amino acid biosynthetic process

GO:0009086 methionine biosynthetic process

molecular_function

GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001063s00030488.1	PF08267.7	Meth_synt_1	29	195	4.30E-71
Glyur001063s00030488.1	PF01717.13	Meth_synt_2	415	701	3.40E-107

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.903
SRR1783600	control	2.865
SRR1783602	moderate drought stress	2.115
SRR1811619	moderate drought stress	2.155

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.066
DRR006520	Root Summer glycyrrhizin high producing strain	11.738
DRR006521	Root Winter glycyrrhizin high producing strain	0.105
DRR006522	Root Winter glycyrrhizin high producing strain	0.136
DRR006523	Root Summer glycyrrhizin low producing strain	7.209
DRR006524	Root Summer glycyrrhizin low producing strain	6.815
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.867
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.679

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.360
SRR2868004	Drought Stress (root)	9.399
SRR2967015	Control (root)	11.082

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.115
SRR9715740	Leaf	0.311
SRR9715741	Leaf	1.996
SRR9715739	Root	1.684
SRR9715742	Root	16.776
SRR9715743	Root	13.955

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.591
SRR8749028	MeJA induced 9h	1.324
SRR8749029	MeJA induced 9h	0.319
SRR8749030	Uninduced	0.550
SRR8749031	Uninduced	0.371
SRR8749032	Uninduced	0.034

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.331
SRR8400027	Control - Root	9.861