Gene detail

Gene detail information of Glyur001062s00037246

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G26500.2	2.00E-23	cytochrome b6f complex subunit (petM), putative
NR	NP_001235238.1	5.95E-45	uncharacterized protein LOC100500243 [Glycine max]
Swissprot	tr\|P80883\|PETM_SPIOL	2.00E-13	Cytochrome b6-f complex subunit 7 (Fragment)
trEMBL	tr\|C6T146\|C6T146_SOYBN	2.00E-45	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G21150.1}

Sequence

Transcript Sequence

>Glyur001062s00037246.1
ATGAGGCACCGTGAGACGACCCGTAGCCGCAGGTGGTGGCGTTTGGGGATGCTTGGGGCAGTTAACGCCGTTGACGATGGCTGTCGAGACAGTGGCATCTGTGGTAGGCCATCGAGAGGGGGTGGCCATGGAGGTGAAAATTTGTTGTCGTGGAGGAGTATGGCCATGGAGGTGAGGATCGAGATAGAAGTAAAAATAATGGCCACAGCCTCGGCTACAATCACTGTTGTGGGAAGCTCCTCCATTACTACTGGCAGCTCGAGGAGTAGTACTAGGAAGAGTAATGNGCAGTACTTAATCAGAGGGCTCACTTCTTTTAATGGGTTGAAGGCTCATAATTCAACTGTGACATCACTGGGACTTCCTGTGACCACTGAGAAGGCCTTTGCAAAGGTTGTGAGCTCCTTGAAATCTTCTAATAAGGGGGGAAGAAGAAGAGGTGGAGGTGCAGCCTCTTCAACATGTAATGCTGCAGGTGAGATTTTCCAGATTGCAGCCATCATGAATGGGCTTGTTCTCATTGGGGTTGCAGTTGGATTTGTTCTTCTTCGAATTGAAGCAACTGTGGAAGAGGCTGAGTGAACAATTTCATTTAACTTCTTTATCAGTTGATTCATATATATATATATGTCTATCTTTTTTTATCAGAGAAAACAAGCTGTATCTTTCTTTTAATTCTTGATGTGATGTAGAAACTGAATTTTTCTTGGGTATCTGAATAGTAAGTACCATATGGGTTTTTATTTTGGAGATATCAGAGAGATAGATAGATAGATAGATAATTAATTGTACAAATTGATGTCTGGTTTTTGACTTCAAAAATTACCCTTTTGGAAGATTTGAAGATTAGCATTTTTTTTTNGTTACCATGGTATTGGCGGGAGTATCCTCCGGCTACTAGCACAGAGACTAATCTCCCTCGGGACCTTGGCTGTATTAAGGCTATCCCTCNCAGCGCNCTTTTTTTTATCAAACCNAAGGCTCGAACACGAGACCTTGGGATGAGGACCGACCGCAGTTGCCAGTTGAACCAATGGACGTTGGTAGATTAGCATATTGACAGACTTGTTGAAAATGTGTAGTTTAAGGCCCTGTTGGATAAACTTCTCCATAAACACTTTTAACATATGTATAAATAAATATAGAAGATAATGTTTAACAGGTAACAAGATTCACCATAACCCTAGTATGAGATTTAGTTAACTATAGACATAATAGCAACCACAAAAACCAAAAAAGAATTCATAAAGAAAGACAGAAAGAACCCTCTTTATAAGATCGATTTTCACTGTATATCATCAGATTCCGGCTTAGCTCTGGAAGCTCTCACTCTATTCTAAAGCTCTTAGATTTTGGAGAAAGGGGATTGATATTTGCAAGTCTTGTTTGCATCAAAACAGCTAGAAACTAAAAGCAATTACAAACTAGTTAACTGAATATGATGAGAGACCCAACAACAAAGTTTCAGACTCCACCATGACCAATGAAGATTTTAAGCAGGCAAATTCACAATCTACCACAGTTAAACAGGCAAGCCCGGAGCTTATCAAAAAAAGAAACAGGCAAGCCCGGATTGGCTATATAATGCTAATACCGTTATCATTTAGTGTCAAGTTCAAGTTACCGGTCTTCTATGGTAGTTTCTTTCAATAATGCAAGAAGCATATGCTCGCTCCAGATCTCATTGTTTACTTTAGAAATTCCCCCTTTAGCTGACCTATTTCAATTAGAGGGAATACGATCCAAAACTCTTTCAATCATAAGAAATGTCAACACATGCTTCGTTTCTGCTTATGTATGTTCCAATTGATATCACAAACTTCATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01062	2367	5884	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0009512 cytochrome b6f complex

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001062s00037246.1	PF08041.6	PetM	159	185	1.10E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.235
SRR1783600	control	0.180
SRR1783602	moderate drought stress	0.104
SRR1811619	moderate drought stress	0.104

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.250
DRR006520	Root Summer glycyrrhizin high producing strain	0.235
DRR006521	Root Winter glycyrrhizin high producing strain	0.060
DRR006522	Root Winter glycyrrhizin high producing strain	0.009
DRR006523	Root Summer glycyrrhizin low producing strain	0.010
DRR006524	Root Summer glycyrrhizin low producing strain	0.060
DRR006525	Leaf Summer glycyrrhizin high producing strain	303.894
DRR006526	Leaf Summer glycyrrhizin high producing strain	306.356

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.808
SRR2868004	Drought Stress (root)	2.583
SRR2967015	Control (root)	0.395

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	122.355
SRR9715740	Leaf	167.204
SRR9715741	Leaf	80.410
SRR9715739	Root	0.087
SRR9715742	Root	0.180
SRR9715743	Root	0.137

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.245
SRR8749028	MeJA induced 9h	1.529
SRR8749029	MeJA induced 9h	0.579
SRR8749030	Uninduced	0.520
SRR8749031	Uninduced	0.132
SRR8749032	Uninduced	0.699

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.171
SRR8400027	Control - Root	1.376