Gene detail information of Glyur001060s00031988 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G07480.1 | 1.00E-91 | KAR-UP oxidoreductase 1 |
| NR | KEH41339.1 | 1.58E-174 | 2OG-Fe(II) oxygenase family oxidoreductase [Medicago truncatula] |
| COG | NP_248837.1 | 9.00E-11 | oxidoreductase [Pseudomonas aeruginosa PAO1] |
| Swissprot | tr|Q9ZWQ9|FLS_CITUN | 1.00E-35 | Flavonol synthase/flavanone 3-hydroxylase |
| trEMBL | tr|A0A072VH36|A0A072VH36_MEDTR | 6.00E-175 | 2OG-Fe(II) oxygenase family oxidoreductase {ECO:0000313|EMBL:KEH41339.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01060 | 55542 | 60050 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001060s00031988.1 | PF03171.15 | 2OG-FeII_Oxy | 164 | 258 | 1.80E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.177 |
| SRR1783600 | control | 0.165 |
| SRR1783602 | moderate drought stress | 0.613 |
| SRR1811619 | moderate drought stress | 0.727 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.228 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.205 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.133 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.980 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.115 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.115 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.377 |
| SRR2868004 | Drought Stress (root) | 1.055 |
| SRR2967015 | Control (root) | 1.366 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.065 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.003 |
| SRR9715739 | Root | 0.729 |
| SRR9715742 | Root | 0.441 |
| SRR9715743 | Root | 0.344 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.588 |
| SRR8749028 | MeJA induced 9h | 13.143 |
| SRR8749029 | MeJA induced 9h | 13.773 |
| SRR8749030 | Uninduced | 15.837 |
| SRR8749031 | Uninduced | 20.119 |
| SRR8749032 | Uninduced | 35.393 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.310 |
| SRR8400027 | Control - Root | 0.715 |