Gene detail

Gene detail information of Glyur001058s00023539.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G58610.1	3.00E-119	PHD finger transcription factor, putative
NR	XP_004500431.1	0	PREDICTED: uncharacterized protein LOC101498411 [Cicer arietinum]
Swissprot	tr\|F4KBP5\|CHR4_ARATH	1.00E-08	Protein CHROMATIN REMODELING 4 {ECO:0000303\|PubMed:16547115}
trEMBL	tr\|A0A072UYY7\|A0A072UYY7_MEDTR	0	PHD zinc finger protein {ECO:0000313\|EMBL:KEH34313.1}

Sequence

Transcript Sequence

>Glyur001058s00023539.1
ATGGCAATGGAGGGCGTGAACAATTCTAGGAGTAGGAGGCGTAAAAGAGAGTTCCCGGAAAGAAAGCTTCAAATCAATGAAAGGGTCGAGGTGAGGAGTATGGAGGAGGGCTTTCTGGGCTCATGGCATCCGGGGACAGTTATCCACTGTGGGAGGCTGAAGCGCCATGTTAGATATGAGAATGTTTTGGATGATGATGGGCTAAATCATCTTGTGGAAGTAGTGAGTGTTTCAAGTGCTTTGGAGGGTGATATTAGTTATCCGAATTGCTGCGAACGAGGGTTGATTAGGCCTCTGCCACCTTTGATTGAGTTTGAGAAACAGGATCTCAAGTTTGGTCTGTGTGTTGACGTGAACCATCAGGAAGCTTGGTGGGAAGGTGTCATATTTGATCACTGTGATGGAATGGAGGAGAGGAGCGTGTTTTTTCCAGATTTGGGCGATGAAATGAAGATTGGAATTCATCAAATGCGGATTACTCAGGACTGGGATGAAGTTACGGAGAAGTGGGAGCAACGGGGGAATTGGGTGTTTCTTGAATTGATTGAGGAGTGTGAGAGGGAATCATATGTTGCAGTTTCAGCAAAGCAGATTTGGTATGATGTGCGGGAAAGAAAGGATTTTGGCATGATTGGAGATTGGACATTGAATGTGAGGAAAGACTTGTGGAGAGACGTGGTATTGGAGGTAGTTAGTGACTACTGGACTCTTACAGTAAAAGAAGTTTTCTCAGCTTTAAACCTTCCAGAGCTGGAAACGGTTGAACTCGTGTCTAATGTGGAACTAAACATGACTTTCCCTGAAAAGGAAATTTTTGAGCAGAAAGAACCTGTTCTTCCTGTTAAAAAAGACTTGTCTAAGTTTCAAAATGAAATTTCCTGCGATGGTGCTGGCGAAGTAGTGTCAGGTGCTATCATTTGCGAAAAAAGTGAACATATATCATCTACTACTTTAAGGTCCAATCATTGGAAACCTCTAACATTGTCTGAGATTGACCTCTGTCCTGATGCTGTTCAGCAATATGTACTTGCTTATAAGAACATGAAAAATAGGGCATTATGGAAGGAAAAAGTACAAAAACATCTTGCATATATTGGATGGAAAATTGAGCGGTCAGAANGCAAATTTGGTGTTAAATACAGATACAAGTCGCCTGATGATGAACAGGGCCAAAAGAATGTTTATTACTCACTTATTCAACTTTGTAAAGTTATGCAAAAAGAATCCCGCATGAACTCTTTCCCGTCCCAAAATGATCATAGTATTACAATGCATCCTACGGTTGACTGTCATGTTCCACATGTGCTTCTTAATCCATCGGAAAAGATTCAGGACCTAGATATTTCTCCTCCAATTGAGCCGCCTTCTTCTGTTGCAGTTGTAGATGAACATGATTATTGTCCTCAAGCTGTTGTGGAATACCACAATCATGCATTCGATAAGAACTGGGCTGATAAAAGAAAATGGGTATCGAAAGCAAAGAAGCATCTGTTAGCAGAAGGATGGATTTTTGACCCTCCACCTCCAACTAATAAAAGAAGGGGAACTACATACATATCTCCACAACATCGGAGATTTGCAACACTCCATGCAGCATGCAGATTTTGTATCGAAGAAATTATTTCTAAATGGAATATGTCCGGCATGCAACCTTTAAATGTCTCAGCCATTAATGAGGAAAATGTTAAGCAGGTATTGAGGGATCTTTTATTTCGTGGAGCATCTCAATTGCTTCNAAAGGAACCCACCACCTTACATACCACAGATGGTGTTGCTGCGAATAGATCAACCGCAAATCCGAAGCGGAAACGCTTGAGGAATTCAAAGGCCAGCCTACCGAAGCACCAAAGCAATGGATTACCTCAACGGGTGCTGCGTTCAAATAAAAGGGTGCAAAAGGTGTCTGCCCCTTGTTTGTCACATCAGAAACCTCTAAATGTTCTGTCTTGGTTGATAGACAGCAATGTGGTGTTACCAAGGTCCAAGGTTTATTATCCTGCAAAAGGCAGGCCGCTTGAGGGGAGAATAACTCGTGATGGAATTAAGTGTAACTGTTGTCGGTCAATATACAGTCTTGCTGGCTTTGAAAAGCATGCTACCNGCAGTAGTACCGACAGACCAAGTGCTAGCATCCGTTTGGAAGATGGTAGGTCACTCCTAGATTGCCAGATGCAAATAATGCAAGATCATAAGACAAGGGAAACTATGGAAAAACCATTCAATGATTTGTGTGAAGGAGAGAATGACTACATATGTTCTGTTTGCCACTACGGCGGTGAACTTATTATGTGTGATCAATGCCCATCTTCATTTCATACGATGTGCCTCGGGCTGGAGGATACCCCTGATGGTGACTGGTTTTGTCCATCATGTCGTTGTGGGATTTGTGGCCAAAGAAAAATCAATGGGGATGAGGACAGACACTTCATTACTTGCATTCAGTGTGAACATAAATATCATGTTATATGCCTGAAAAATAGAGATATAGATACATCAAGAAGATATCTGGAAAACTGGTTCTGCGGAAATGACTGTGAAAAGATATATGCAGGCCTTCATAAATTGTTAGGAAAGCCAGTTTCAGTGGGTGTGGGCAATCTAACATGGACATTGATGAAGTTTATCAACTCTCACAGTTGTGATCTTGATAGTATTAAAAGTGAGTTGTTGGCAGAAAGTTTCATCAAACTCAATGTTGCTCTTTCGGTGATGCATGAATGTTTTGAGCCCCTAAAGGAACCCTCCTCTAGCAGAGATCTCATGGAAGATGTTATATTCAGCAGATGGTCAGAGCTTAATCGATTAAATTTCCGGGGTTTNTACACTGTACTTCTGGAGAGAAATGATGAACTGATTAGTGTGGCAATTGTTAGGGTCTTTGGAGAGAAGGTAGCTGAAGTACCTCTTGTTGGTACCAGATTACAGTANCGTCGACATGGAATGTGTCGCATTCTAATGAATGAGCTTGAAAAGAAGCTCATGCAATTAGGAGTGGAGAGGCTTGTTCTGCCTGCTGTTCCTAGCGTGCTAGAAACATGGACCAGTTCTTTTGGCTTTGCAATGATGACAAGTTTTGAGAGATCACAATTTCTGGACTATACTTTCCTAGATTTTCAGGATACCATCATGTGCCAGAAACTGTTGAAAAAAAAGATTCCGTCTCCAGATTCAGTTTTGTCAACAGAGTTCCAACAAAAACACAATGTTTCCTCTGGAAGTTATGGTGCTGCTAATCTTGATAAGTCTAGTCCATTATCCGAAGTTTTCGAATCAGGAGAGATTGACAAAAGAGGGATGCTGGATCAACAAATGGGGGAGTATGTCACGCAAGANCAACAAATGGAGGATACTTATGCAGACAATAATGATCATCTTGGTGATGGTGCTATTGACTCTGTCACCATGGTGAAGCAACCAAGTCCTGAGGATCAACAGTGCCAGAATGGAACCTCTCCACAGTGCTCTTTTGTAAAATGGAATGGCTCATGGAATTGA

Protein Sequence

>Glyur001058s00023539.1
MAMEGVNNSRSRRRKREFPERKLQINERVEVRSMEEGFLGSWHPGTVIHCGRLKRHVRYENVLDDDGLNHLVEVVSVSSALEGDISYPNCCERGLIRPLPPLIEFEKQDLKFGLCVDVNHQEAWWEGVIFDHCDGMEERSVFFPDLGDEMKIGIHQMRITQDWDEVTEKWEQRGNWVFLELIEECERESYVAVSAKQIWYDVRERKDFGMIGDWTLNVRKDLWRDVVLEVVSDYWTLTVKEVFSALNLPELETVELVSNVELNMTFPEKEIFEQKEPVLPVKKDLSKFQNEISCDGAGEVVSGAIICEKSEHISSTTLRSNHWKPLTLSEIDLCPDAVQQYVLAYKNMKNRALWKEKVQKHLAYIGWKIERSEXKFGVKYRYKSPDDEQGQKNVYYSLIQLCKVMQKESRMNSFPSQNDHSITMHPTVDCHVPHVLLNPSEKIQDLDISPPIEPPSSVAVVDEHDYCPQAVVEYHNHAFDKNWADKRKWVSKAKKHLLAEGWIFDPPPPTNKRRGTTYISPQHRRFATLHAACRFCIEEIISKWNMSGMQPLNVSAINEENVKQVLRDLLFRGASQLLXKEPTTLHTTDGVAANRSTANPKRKRLRNSKASLPKHQSNGLPQRVLRSNKRVQKVSAPCLSHQKPLNVLSWLIDSNVVLPRSKVYYPAKGRPLEGRITRDGIKCNCCRSIYSLAGFEKHATXSSTDRPSASIRLEDGRSLLDCQMQIMQDHKTRETMEKPFNDLCEGENDYICSVCHYGGELIMCDQCPSSFHTMCLGLEDTPDGDWFCPSCRCGICGQRKINGDEDRHFITCIQCEHKYHVICLKNRDIDTSRRYLENWFCGNDCEKIYAGLHKLLGKPVSVGVGNLTWTLMKFINSHSCDLDSIKSELLAESFIKLNVALSVMHECFEPLKEPSSSRDLMEDVIFSRWSELNRLNFRGXYTVLLERNDELISVAIVRVFGEKVAEVPLVGTRLQXRRHGMCRILMNELEKKLMQLGVERLVLPAVPSVLETWTSSFGFAMMTSFERSQFLDYTFLDFQDTIMCQKLLKKKIPSPDSVLSTEFQQKHNVSSGSYGAANLDKSSPLSEVFESGEIDKRGMLDQQMGEYVTQXQQMEDTYADNNDHLGDGAIDSVTMVKQPSPEDQQCQNGTSPQCSFVKWNGSWN

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01058	84551	91137	-

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008080 N-acetyltransferase activity

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001058s00023539.1	PF05641.7	Agenet	28	102	1.70E-08
Glyur001058s00023539.1	PF00628.24	PHD	751	793	7.20E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.021
SRR1783600	control	0.021
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.019
DRR006524	Root Summer glycyrrhizin low producing strain	0.003
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.026
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.053

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.027
SRR2868004	Drought Stress (root)	0.042
SRR2967015	Control (root)	0.029

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.057
SRR9715740	Leaf	0.018
SRR9715741	Leaf	0.019
SRR9715739	Root	0.014
SRR9715742	Root	0.017
SRR9715743	Root	0.052

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.735
SRR8749028	MeJA induced 9h	1.816
SRR8749029	MeJA induced 9h	1.343
SRR8749030	Uninduced	0.030
SRR8749031	Uninduced	0.022
SRR8749032	Uninduced	0.020

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.056
SRR8400027	Control - Root	0.057