Gene detail

Gene detail information of Glyur001058s00023536.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G47340.1	glutamine-dependent asparagine synthase 1
NR	AAB81011.1	asparagine synthetase [Medicago sativa]
COG	YP_004737172.1	asparagine synthase [Zobellia galactanivorans]
Swissprot	tr\|P49093\|ASNS2_LOTJA	Asparagine synthetase [glutamine-hydrolyzing] 2
trEMBL	tr\|O24483\|O24483_MEDSA	Asparagine synthetase {ECO:0000256\|PIRNR:PIRNR001589}

Sequence

Transcript Sequence

>Glyur001058s00023536.1
ATGTGTGGCATACTTGCTGTACTTGGTTGCACAGATAATTCTCAGGCCAAAAGGGTCCGCCACCGTGGCCCTGACTGGAGTGGGCTCCACCAACACGGTGATAACTATTTGTCTCATCAACGGTTAGCCATAGTTGATCCAGCTTCTGGTGATCAACCTCTCTTCAATGAAGACAAATCTATTATTGTTACGGTGAATGGAGAGATCTACAATCATGAAGATCTCAGGAAACAATTGCCTAACCACAAGTTCCGAACAGGATGTGACTGTGATGTTATTGCACACCTGTATGAGGAGCANGGAGAAAACTTTGTGGACATGCTGGATGGGATATTTTCATTCGTTGTGCTGGATACNCGTGACAACAGTTTCCTTGTGGCACGGGATGCTATAGGGGTCACTTCCTTATACATTGGTTGGGGACTAGATGGCTCCGTTTGGATTGCATCAGAACTGAAAGGTCTGAATGATGATTGTGAACATTTTGAGGTATTTCCACCTGGTCACTTGTACTCTAGCAAGGAAAGAGAGTTCAGGAGATGGTACAACCCTCCATGGTTCAATGAGGTCATTCCATCAACCCCTTATGATCCTCTAGCTTTGAGGCATGCCTTTGAGAAGGCCGTCATAAAAAGGTTGATGACTGATGTGCCTTTTGGTGTCTTGCTATCTGGAGGTTTGGACTCTTCATTGGTTGCATCTGTCACTGCCCGACACCTAGCAGGCACAAAGGCTGCCAAGCAGTGGGGAACAAAGTTACACTCATTCTGTGTAGGCCTTGAGGCTGCAAGAGAAGTAGCAGACTTTTTAGGAACTGCCCACCACGAGTTTCACTTCACTGTTCAGGATGGCATAGATGCCATTGAGGATGTCATCTATCATACAGAAACATATGATGTTACTTCAATCAGGGCAAGCACACCCATGTTTCTGATGTCTCGTAAGATCAAATCACTAGGAGTCAAGATGGTACTCTCTGGAGAAGGATCTGATGAGGTTTTTGGAGGGTATCTGTATTTCCACAAGGCACCCAACAAGGAAGAGTTCCAAAGAGAAACATGCCGCAAGATCAAAGCACTCCACAAGTATGATTGCTTGAGAGCCAATAAATCAACCTATGCTTGGGGTCTGGAAGCCAGAGTACCATTTTTGGACAAGGACTTCATCAGTGTTGCAATGGACATTGATCCCGAGTATAAAATGATAAAACAAGAAGAAGGAAGAATTGAGAAATGGGTACTTAGGAGGGCCTTTGATGATGAAGAGCAACCTTATCTGCCAAAGCACATTTTATATAGGCAGAAAGAACAATTCAGTGATGGAGTTGGCTACGGTTGGATTGATGGCATTAAGGACCATGCTGCAAAACATGTGACTGATAAAATGATGCTCAATGCATCTCACATCTTCCCCTTCAACACTCCAAACACCAAAGAAGCCTATTACTATAGGATGATCTTTGAGAGGTTTTTCCCTCAGAACTCAGCCAGGCTCACTGTTCCTGGAGGAGCTAGTGTTGCATGTAGCACTGAGGCAGCTATTGAGTGGGATGCTGCTTGGTCCAACAACCTTGATCCTTCTGGTAGAGCAGCACTTGGAGTACATGATTCAGCTTATGAGAATGAAAACCATGTCAACTCTGTTAGTGTAGAGCCAGAGAAGATCATACCCAAGATGGAAGTTTCTCCNCTTGGAGTTGCCATCCGGAGCTAGGATGAGCCATGGCAAGGAACTATTTGCCCCCAAAAAAAAACCAAGATATTATATCAGTCTACATAAAAGAAAATTTTGCCTGCTGTGTATTTAATTCAGGCAAATGCTATATATAGTGAGAGGGATAAGGCTCTCAAGTGTTGTGGGGTTGTGCAACCCANATCTTGTGTTATTTTGAATTTGAACACTATGATCATAATGTATTTTGCTTTGAAGAAAAGTTTATGTACTTGTGTATCTTTTATCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01058	72222	76895	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01953	asnB, ASNS	EC:6.3.5.4	Alanine, aspartate and glutamate metabolism	map00250

Gene Ontology

biological_process

GO:0006529 asparagine biosynthetic process

GO:0008152 metabolic process

molecular_function
GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001058s00023536.1	PF13537.1	GATase_7	39	156	1.10E-36
Glyur001058s00023536.1	PF00733.16	Asn_synthase	201	435	2.60E-66

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	34.950
SRR1783600	control	35.093
SRR1783602	moderate drought stress	115.504
SRR1811619	moderate drought stress	114.582

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	79.459
DRR006520	Root Summer glycyrrhizin high producing strain	79.970
DRR006521	Root Winter glycyrrhizin high producing strain	7.878
DRR006522	Root Winter glycyrrhizin high producing strain	7.672
DRR006523	Root Summer glycyrrhizin low producing strain	26.582
DRR006524	Root Summer glycyrrhizin low producing strain	26.719
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.642
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.867

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	258.786
SRR2868004	Drought Stress (root)	404.673
SRR2967015	Control (root)	670.842

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.762
SRR9715740	Leaf	5.496
SRR9715741	Leaf	11.072
SRR9715739	Root	85.513
SRR9715742	Root	133.329
SRR9715743	Root	123.383

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	37.202
SRR8749028	MeJA induced 9h	252.544
SRR8749029	MeJA induced 9h	46.161
SRR8749030	Uninduced	169.983
SRR8749031	Uninduced	323.506
SRR8749032	Uninduced	127.345

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	140.618
SRR8400027	Control - Root	60.933