Gene detail

Gene detail information of Glyur001058s00023534

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G30020.1	1.00E-112	Protein phosphatase 2C family protein
NR	XP_003552947.1	0	PREDICTED: probable protein phosphatase 2C 25-like [Glycine max]
COG	YP_003709340.1	6.00E-20	serine/threonine PP2C protein phosphatase [Waddlia chondrophila WSU 86-1044]
Swissprot	tr\|O80871\|P2C25_ARATH	1.00E-151	Probable protein phosphatase 2C 25
trEMBL	tr\|I1MZY0\|I1MZY0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G06810.1}

Sequence

Transcript Sequence

>Glyur001058s00023534.1
ATGTCTTGCTCCGTGGNGGTTCCAAGTTCCCCTGTGTTCTCTCTTTCCTCTTCCCTTTTCCGCAGCAAAAGCGCCATAATCTCTTCCTCCACGGAACCTCTCACGCTTGCGCTTCCCATTCTCAATTCTTCTACTTCTACGACGTCGTCTTGCTCTTCACCCCCTTCCCAGGTGTTGAAGAGAAAGCGACCCGCCAAGCTTGACATACCAGTTGCTTCTCTCACCTTTGGTGTCACGCCGGCGGCACCGTCGCCGTCGCCGACGAAGGACGCCGTCGAGGTGGAGGGACGTGGGTTTTCTGTGTGTTGCAAGAGAGGAAGGAGGAAGCATATGGAAGATCGTTACTCTGCTGCCGTTGATCTCCATGGAGAATCAAAACAGGCTTTTTTTGGCATATTTGATGGGCACGGAGGCACAAAAGCTTCGGAATTCGCAGCACATAACTTGGAAAAGAATGTGTTGGATGAAGTGATTAGAAGAGATGGGGGTGATATTGAGGAGGCAGTGAAGCATGGTTACCTCAACACAGATTCTGATTTCTTGAAAGAGGATCTTCATGGTGGCTCTTGCTGTGTGACAGCATTGATTAGGAATGGTAACCTTGTCGTGTCCAATGCCGGTGATTGCCGTGCTGTCATTAGCAGAGGAGGTGTTGCTGAGGCCCTAACATCTGATCACCGACCTTCGAGGGAAGATGAAAGGGACAGGATTGAGACTCAGGGTGGCTATGTTGATACATGTCGTGGTGTTTGGAGGATCCAGGGGTCTCTTGCTGTTTCAAGGGGAATTGGAGATGGACACCTGAAACAATGGGTGATAGCAGAACCTGAGACCAAAGTTGTCAGAATTGAACCTCAACATGACTTGTTAATCTTAGCTTCAGATGGATTATGGGAAAAGGTTAGTAATCAGGAAGCAGTAGATATTGCTCGCTCTTACTGTATAGGGAACAACAGACAACGACCCTTGCTGGCTTGCAAGAAACTCGTGGAGTTATCTGTGTCGCGAGGCTCTATCGATGATATAAGTGTTATGATCATCAAATTGCAGAACTATATTTGAAGTCTCATTGGTACAAGAGAAGAAAGGTTGGGAGGGGTATAGGAGGCCTCCATTGTAGTTCACATCATTATTGACCTTCTGCAGTTTAGGCAGAAGATGATGAATGTGATTATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01058	45884	47936	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006470 protein dephosphorylation

molecular_function

GO:0003824 catalytic activity

GO:0004722 protein serine/threonine phosphatase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001058s00023534.1	PF00481.16	PP2C	98	342	2.40E-69

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.022
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.059
SRR1811619	moderate drought stress	0.032

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.164
DRR006520	Root Summer glycyrrhizin high producing strain	0.004
DRR006521	Root Winter glycyrrhizin high producing strain	0.063
DRR006522	Root Winter glycyrrhizin high producing strain	0.085
DRR006523	Root Summer glycyrrhizin low producing strain	0.281
DRR006524	Root Summer glycyrrhizin low producing strain	0.373
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.553
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.549

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.277
SRR2868004	Drought Stress (root)	0.894
SRR2967015	Control (root)	0.443

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.452
SRR9715740	Leaf	0.404
SRR9715741	Leaf	0.179
SRR9715739	Root	0.000
SRR9715742	Root	0.015
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.776
SRR8749028	MeJA induced 9h	8.838
SRR8749029	MeJA induced 9h	3.622
SRR8749030	Uninduced	7.477
SRR8749031	Uninduced	6.087
SRR8749032	Uninduced	2.081

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.830
SRR8400027	Control - Root	0.620