Gene detail

Gene detail information of Glyur001058s00023533

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G11130.1	Clathrin, heavy chain
NR	XP_007146784.1	hypothetical protein PHAVU_006G069700g [Phaseolus vulgaris]
Swissprot	tr\|Q2QYW2\|CLH2_ORYSJ	Clathrin heavy chain 2
trEMBL	tr\|V7BP18\|V7BP18_PHAVU	Clathrin heavy chain {ECO:0000256\|PIRNR:PIRNR002290}

Sequence

Transcript Sequence

>Glyur001058s00023533.1
CTCCCTCTCCCTCTCTGTCTCTGCTCTTTCTCTTCTTAGGCTTCGCTGCTTCAGATCTCGCAGCGTAACAGAGCCTCTCCCTCACCCTTCCACATTTCAAATTCCCCCTCTGATCCACGCACGCCCATCATGGCTGCAAACGCCCCCATCGCCATGAGAGAAGTCTTAACGTTGGGAAGCGTCGGAATCAACCCGCAATTCATCACGTTCACTCACGTGACGATGGAATCGGATAAGTACATTTGCGTCAGGGAAACTGCTCCTCAGAACAGTGTTGTTATGATTGATATGAACATGCCAATGCAGCCTTTGAGACGCCCAATCACTGCTGATTCTGCTCTCATGAACCCCAATACCAGAATTCTCGCTCTCAAAGCTCAAGTTCCGGGAACTACCCAGGATCATTTGCAAGTATTTAACATTGAGACGAAAACAAAGATGAAATCGTATCAAATGAACCAACAGGTTGTGTTTTGGAAGTGGGTAACCCCAAAGACGCTAGGCGTAGTCACTCAGACATCTGTGTATCATTGGTCAATTGAAGGTGATGGTGAGCCGGTGAAGGTGTTNGACCGAACAGCTAATCTGGCAAATAATCAGATCATCAATTATCGTTGTGATCCTAGTGAAAAGTGGTTAGTTTTGATTGGAATTGCTCCTGGCTCGCCTGAGAGACCACAACTAGTAAAAGGAAACATGCAGCTCTTCTCAGTGGATCAACAACGGAGTCAGGCTCTTGAAGCACATGCTGCCTCATTCGCCACATTTAGAAGTGTCAATGCTGGACAGGTTACATCAAAGATGCATATCATTGAACTTGGTGCCCAGCCAGGAAAGCCATCATTTACTAAAAAGCAAGCAGATCTGTTCTTTCCTCCAGACTTTGCTGATGACTTTCCTGTATCAATGCAGATTTCAAATAAATATGGCTTGATATATGTTATCACAAAACTTGGGCTTCTATTTGTATATGATTTGGAGACTGCCACTGCAGTTTATAGAAATCGAATCAGTCCCGATCCTATATTTTTGACGGCAGAAGCATCATCAGCAGGGGGCTTTTATGCCATAAATAGACGCGGCCAAGTGATGCTTGCTACTGTGAATGAGGCAACCATTGTACCTTTTGTTAGCGGCCAGTTAAACAATTTGGAACTTGCTGTTAATCTTGCCAAAAGAGGAAACCTCCCTGGTGCAGAAGAATTGGTTGTTCAGCGTTTTCAAGAATTATTTGCTCAGACCAAGTATAAGGAAGCTGCAGAGCTTGCTGCAGAATCACCACGAGGAATACTTCGTACTCCTGACACAGTTGCTAAATTTCAGAGTGTACCTGTGCAAGCGGGTCAAACACCACCACTGTTGCAATACTTTGGAACTCTGTTAACCAGGGGTAAACTCAACGCTTTTGAGTCATTGGAACTGTCACGACTTGTCGTAAATCAGAACAAAAAGAATCTTTTAGAAAATTGGCTAGCAGAGGATAAACTGGAATGCAGTGAGGAGCTTGGTGACCTTGTGAAGACAGTGGATAATGACCTTGCGTTGAAAATCTATATCAAAGCTAGAGCGACACCGAAAGTTGTTGCAGCTTTTGCAGAGAGGAGGGAATTTGACAAGATCCTGATATATTCCAAGCAGGTTGGATATACACCTGATTACATGTTCCTTCTGCAAACAATTTTACGGACAGACCCACAGGGTGCTGTAAATTTTGCTCTGATGATGTCTCAAATGGAGGGAGGTTGCCCTGTTGACTACAACACAATAACTGATCTCTTTCTTCAGAGGAATTTGATCCGTGAGGCAACGGCTTTTTTGTTGGATGTGCTGAAGCCAAACCTACCCGAACACGGATATCTTCAAACAAAGGTTCTGGAAATTAATCTTGTGACGTTTCCAAATGTTGCTGATGCTATATTGGCCAATGGCATGTTCAGTCATTATGATCGCCCACGTATTGGACAACTCTGTGAAAAGGCTGGCCTTTTCATACGCGCTCTTCAGCATTATGCTGAGTTGCCTGATATCAAACGTGTCATTGTGAATACACATGCCATTGAACCACAGGCTTTAGTTGAGTTCTTTGGAACCCTTTCTCGAGAATGGGCACTTGAGTGTATGAAAGATCTTTTACTGGTCAATCTTAGGGGCAATCTTCAGATAATTGTGCAGACTGCTAAGGAATATTCGGAGCAGCTGGGAGTTGATGCATGCATTAAACTTTTCGAGCAATTCAAATCCTATGAAGGACTGTATTTTTTCTTGGGTGCATACTTGAGCTCCAGTGAGGATCCTGATATTCACTTCAAGTACATTGAAGCCGCTGCTAAAACTGGACAAATTAAGGAGGTAGAGCGGGTGACTAGGGAATCAAACTTCTATGATGCTGAGAAGACAAAGAATTTTCTAATGGAGGCTAAGCTTCCAGATGCACGTCCATTGATTAATGTGTGTGATCGTTTTGGCTTTGTTCCGGATCTCACCCATTATCTTTATACTAACAACATGCTTCGCTATATTGAAGGTTATGTTCAAAAGGTCAATCCTGGAAATGCTCCTCTAGTTGTAGGACAGTTGTTAGATGATGAATGCCCTGAAGATTTCATTAAAGGTCTCATACTTTCAGTTCGTTCCCTTCTGCCGGTTGAGCCTTTAGTTGAAGAATGTGAGAAGAGGAACCGTCTCCGCTTGCTGACTCAGTTCTTGGAGCATCTAGTGAGTGAAGGAAGCCAGGATGTACATGTACATAATGCCCTGGGCAAAATCATCATTGACAGCAACAACAATCCTGAGCATTTTCTCACAACAAACCCATATTATGATTCTCGTGTTGTTGGTAAATATTGTGAGAAGCGGGATCCTACCCTTGCTGTTGTTGCTTACCGAAGAGGGCAATGCGACGATGAGCTTGTTAATGTTACTAATAAAAATTCCTTGTTCAAACTCCAGGCGAGATATGTTGTGGAAAGGATGGATGCTGACCTCTGGGAGAAAGTTCTTAATCCCGAGAATGAGTTTAGAAGGCAGTTGATTGATCAAGTGGTGTCCACTGCTTTGCCTGAAAGCAAGAGTCCTGAACAAGTTTCAGCTGCAGTTAAAGCTTTTATGACTGCCGATCTTCCCCACGAGTTAATTGAGCTCCTTGAAAAGATTGTGCTTCAAAATTCTGCTTTTAGTGGAAACTTTAATCTGCAAAATTTGCTGATTCTCACTGCAATCAAGGCAGATCCTTCAAGAGTTATGGATTACATAAACAGGTTGGACAACTTTGATGGGCCTGCAGTGGGGGAGGTGGCTGTGGAAGCGCAACTATATGAAGAGGCATTTGCTATTTTCAAGAAATTTAATTTGAATGTTCAGGCTGTTAATGTCCTNCTGGATAACCTTCAGACTATTGATCGAGCTGTGGAGTTTGCTTTNCGGGTTGAGGAAGATGCTGTTTGGAGTCAGGTTGCTAAGGCACAACTAAGAGAAGGATTAGTAAGTGATGCAATTGAGTCNTTCATTCGTGCAGATGATGCAACTCATTTCTTAGAGGTTATAAAGGCTGCTGAAGATGCAGATGTATACCATGACCTGGTAAAGTATCTTCTCATGGTTAGGCAGAACACCAAAGAGCCCAAGGTAGACAGTGAGCTCATTTATGCTTATGCTAAGATTGATCGGCTTGGTGAAATTGAAGAGTTTATACTGATGCCAAACGTTGCCAATTTACCGAATGTTGGAGACCGCTTGTATGATGAGGCTCTGTATGAGGCTGCAAAAATTATATTTGCTTTTATCTCTAACTGGGCTAAGTTAGCGGTCACATTGGTGAAGCTAAAACAGTTCCAGGGTGCTGTTGATGCTGCCAGGAAAGCAAACAGTTCAAAAACTTGGAAGGAGGTTTGCTTCGCCTGTGTTGATGCTGAGGAATTNCGCTTAGCTCAGATTTGTGGTCTCAATGTCATCATTCAGGTGGATGATTTGGAGGAGGTTAGTGAGTATTATCAGAACAGAGGATGCTTCAATGAACTCATATCTCTAATGGAGAGTGGGCTAGGATTGGAGCGTGCACATATGGGTATCTTTACAGAATTGGGAGTTCTTTATGCAAGATATCGATATGAGAAACTAATGGAACACATTAAGTTGTTCTCAACTCGGCTTAACATTCCAAAGGTAATTCGGGCATGTGATGAGCAGCAGCANTGGAAAGAACTTACATACTTATACATCCAATATGATGAGTTTGATAATGCTGCAACCACCGTAATGAACCACTCTCCTGAAGCATGGGATCACATGCAATTCAAAGATATTATAGTTAAAGTGGCTAGTGTGGAACTCTACTATAAGGCTGTTCATTTCTACTTGCAAGAGCATCCTGACGTAATAAATGATCTTCTAAATGTGATTGCTCTTCGTGTGGACCACACTCGCGTAGTAGATATAATGCGGAAGGCTGGCCACCTCAGATTAATCAAGCCATACATGGTTGCAGTCCAAAGCAATAATGTGTCTGCTGTCAATGAAGCTCTAAATGAAATTTACGTTGAGGAAGAGGACTATGACAGACTTCGAGAGTCAATAGATCTGCATGATAACTTCGATCAAATTGGTCTTGCACAGAAGATTGAGAAGCATGAACTTCTTGAGATGAGGCGTGTTGCTGCATACATTTATAAGAAAGCAGGAAGATGGAAGCTATCCATTGCTTTGTCAAAGAAAGACAATCTTTACAAGGACTGTATGGAAACTTGCTCTCAATCTGGTGACCGTGAACTCTCAGAGGATTTGCTTGTCTACTTTATTGAGAAGGGGAAGAAAGAGTGTTTTGCATCCTGTCTCTTTGTCTGTTATGATCTCATTCGGCCAGATGTTGCTCTTGAGCTAGCTTGGATGAATAATATGATTGATTTCGCTTTCCCATATCTCTTACAATTTATTCGAGAGTATACAAGCAAGGTAGATGAGCTTATCAAGGACAAAATTGAAGCACAGAATGAGGAGAAAGCTAAGGAGAAGGAGGAGAAGGACGTAATTGCTCAGCAGAATATGTATGCCCAGTTGCTACCACTTGCTTTGCCGGCACCACCGATGCCGGGAATGGGGGGAGGAGGGTATGCCCCTCCCCCACCAACACCACCTATGGGTGGAATGGGGATGCCACCAATGCCTCCTTTTGGCATGCCTCCAATGGGCTACTGATCTNCCGATTGACAACAGAGGAGAGAATTTTGGCATAAATATTACCGGTGAAGCTAGATAGTTTAGAATATTCCATTTTTGCCTTCAAGGTGACTTCGTTAGGGTTAAAGAATTTGGCGTGGTGGGACCAAGCATCTGCCTTCTAGCCTGATACTACTTTCCAATGATTGCGGCTTTCTTCGTTGAAAGTTTTTTGAGTTCTTATTTCTTTTGGTTGTTTGATCATTCTTGTGAGAGCCAGGGTGGTCAATTAATCCTGGTTGTATCTTTTTTAGGCTTCGGCTTAGTTGCGGCGTGTATAGTTGATTTTCTCTAATTAATATTTGTTTTTCTTTTACAGCAATTAATTAATATTTGTTTTCTTAGTTCTGTAGTCATATAAATGTATTCTGATCAGGACTTAAAAATCTT

Protein Sequence

>Glyur001058s00023533.1
MAANAPIAMREVLTLGSVGINPQFITFTHVTMESDKYICVRETAPQNSVVMIDMNMPMQPLRRPITADSALMNPNTRILALKAQVPGTTQDHLQVFNIETKTKMKSYQMNQQVVFWKWVTPKTLGVVTQTSVYHWSIEGDGEPVKVXDRTANLANNQIINYRCDPSEKWLVLIGIAPGSPERPQLVKGNMQLFSVDQQRSQALEAHAASFATFRSVNAGQVTSKMHIIELGAQPGKPSFTKKQADLFFPPDFADDFPVSMQISNKYGLIYVITKLGLLFVYDLETATAVYRNRISPDPIFLTAEASSAGGFYAINRRGQVMLATVNEATIVPFVSGQLNNLELAVNLAKRGNLPGAEELVVQRFQELFAQTKYKEAAELAAESPRGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYMFLLQTILRTDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGYLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIGQLCEKAGLFIRALQHYAELPDIKRVIVNTHAIEPQALVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQTAKEYSEQLGVDACIKLFEQFKSYEGLYFFLGAYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELVNVTNKNSLFKLQARYVVERMDADLWEKVLNPENEFRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNLQTIDRAVEFAXRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATHFLEVIKAAEDADVYHDLVKYLLMVRQNTKEPKVDSELIYAYAKIDRLGEIEEFILMPNVANLPNVGDRLYDEALYEAAKIIFAFISNWAKLAVTLVKLKQFQGAVDAARKANSSKTWKEVCFACVDAEEXRLAQICGLNVIIQVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKVIRACDEQQXWKELTYLYIQYDEFDNAATTVMNHSPEAWDHMQFKDIIVKVASVELYYKAVHFYLQEHPDVINDLLNVIALRVDHTRVVDIMRKAGHLRLIKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRLRESIDLHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKLSIALSKKDNLYKDCMETCSQSGDRELSEDLLVYFIEKGKKECFASCLFVCYDLIRPDVALELAWMNNMIDFAFPYLLQFIREYTSKVDELIKDKIEAQNEEKAKEKEEKDVIAQQNMYAQLLPLALPAPPMPGMGGGGYAPPPPTPPMGGMGMPPMPPFGMPPMGY

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01058	32601	43653	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0016192 vesicle-mediated transport

cellular_component

GO:0030130 clathrin coat of trans-Golgi network vesicle

GO:0030132 clathrin coat of coated pit

molecular_function

GO:0005198 structural molecule activity

GO:0005488 binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001058s00023533.1	PF01394.15	Clathrin_propel	19	55	7.10E-05
Glyur001058s00023533.1	PF01394.15	Clathrin_propel	153	196	1.90E-09
Glyur001058s00023533.1	PF09268.5	Clathrin-link	327	350	4.60E-10
Glyur001058s00023533.1	PF13838.1	Clathrin_H_link	352	417	2.00E-29
Glyur001058s00023533.1	PF00637.15	Clathrin	540	674	2.60E-20
Glyur001058s00023533.1	PF00637.15	Clathrin	684	824	1.70E-20
Glyur001058s00023533.1	PF00637.15	Clathrin	833	964	9.90E-31
Glyur001058s00023533.1	PF00637.15	Clathrin	976	1116	1.00E-31
Glyur001058s00023533.1	PF00637.15	Clathrin	1128	1263	1.40E-27
Glyur001058s00023533.1	PF00637.15	Clathrin	1271	1414	1.90E-29
Glyur001058s00023533.1	PF00637.15	Clathrin	1421	1562	4.40E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.272
SRR1783600	control	8.285
SRR1783602	moderate drought stress	5.043
SRR1811619	moderate drought stress	5.071

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.798
DRR006520	Root Summer glycyrrhizin high producing strain	7.782
DRR006521	Root Winter glycyrrhizin high producing strain	1.405
DRR006522	Root Winter glycyrrhizin high producing strain	1.345
DRR006523	Root Summer glycyrrhizin low producing strain	6.609
DRR006524	Root Summer glycyrrhizin low producing strain	6.584
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.637
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.676

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.903
SRR2868004	Drought Stress (root)	6.644
SRR2967015	Control (root)	7.071

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.896
SRR9715740	Leaf	1.597
SRR9715741	Leaf	2.502
SRR9715739	Root	1.261
SRR9715742	Root	6.345
SRR9715743	Root	5.093

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.898
SRR8749028	MeJA induced 9h	7.499
SRR8749029	MeJA induced 9h	3.855
SRR8749030	Uninduced	1.490
SRR8749031	Uninduced	0.571
SRR8749032	Uninduced	0.539

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.446
SRR8400027	Control - Root	13.423