Gene detail

Gene detail information of Glyur001057s00032942

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G09210.1	4.00E-81	plastid transcriptionally active 13
NR	XP_004506649.1	1.87E-174	PREDICTED: uncharacterized protein LOC101491600 [Cicer arietinum]
COG	YP_001916367.1	4.00E-08	transcription antitermination protein nusG [Natranaerobius thermophilus JW/NM-WN-LF]
trEMBL	tr\|G7JR97\|G7JR97_MEDTR	3.00E-154	Transcription termination factor NusG, putative {ECO:0000313\|EMBL:AES87010.1}

Sequence

Transcript Sequence

>Glyur001057s00032942.1
GATTAATTTAAAACAAAAAAGAAGAAGGGATTAGGAGCATTCTATCCTATCCCTCGGAGGGAGAAGATGAAAGGGGTGCTTCACCTTCAGCTATGGAATCCACCACCACCACCACCACGACCACGCTTCCACAGACTCTCTCCACCCACCACGCTTTCTTCTCTCTCCTTCACACTCCCTCAAACTCAAAGCATTCCCTTCAACTTCAAGCTCTCCTCATCAATCTCCGCGTCCGAGACACAAGAGCTATCGGGAAGAGAGAGGAGGCGGTTGAGGAACGAGAGAAGGGAGAGCAAGAACTGGAGGGAAGAAGTGGAAGAGAGGTTCATTAAGAAGAAGCCCAAGAAGGAGTACAAGTCATGGACAGAGGAACTCAACCTCGANAACCTCATCAAGTTGGGTCCCCAGTGGTGGGTCGTTCGTGTTTCCCGTGTTAAGGGTCAGTACACCGCTCANGTTCTCGCTCGCTCCCTCGCCTTGAACTTCCCTGACATGGACTTTAAGGTGTATGCTCCAGCTATCCATGAGAAAAGGAGATTGAAGAATGGTTCCTATTCCGTTAAACAAAAACCTCTGTTCCCGGGTTGTATCTTTTTGAGATGTGTACTGAACAAACCACTGCATGATTTCATAAGAGAGTATGATGGTGTTGGAGGCTTTATTGGATCCAAGGTTGGAAATACAAAGAGACAGATTAACAAACCAAGACCAGTATCTGAGGATGATATGGAAGCAGTCTTCAAACAGGCAAAAGAAAAACAAGATGAAGCTGACAAAGCATTTGAGGAAGAAGAGAAAAAGGCAGTCCTAAAATCTGGGAATCCTAATACAGAGTTAGACCCAGATGCTTCAAAAGCTATTGTTGATTCTAAGCCTAAAAGGGGATCTAGAAAAACTTCTAACCAGCTCACAGTCACAGATGCTTCATCTCCTAAAGTAAATTATAAACTTCTTGTTAAAGGTTCTACCGTACGAATTATATCAGGAACATTTTCAGGGTTTACGGGCACCCTCAAGAAGCTGAGTCGCAAAACCAAAATAGCCACTGTGCATTTTACTCTATTCGGGAAAGAGAACGTAGTAGACTTAGATGTTAGTGAAATTGCTCCAGAGACCAACTGATGTCTTTTAGGTTCTGTGACTCCCCTGATGGTATGTTTCACATTTTCTGCAGTACTCATAATACACATGTACCATAACTTTGGATCAGTGATATTGAAAAGAAAGAAAAAAAACTCTGAGTTGCACACTGCATGCTCTTTAGGGTTTTTCCATTTGTGATTGAAGTCCATTTTTTTAAAGAAAATGAAATGCATTCTTACCTAGTGCAATCTTGTGTATTATGAGTCATGGGGAAGTTAAGGAATACACTGGTCTTGTTTGGATTCAAAAGCCTAGCTCTAGCTTATGGAGAAGTCTAGTTTACTTTGCATTTTTATTTTTCTCACAAGTGTAATGTTATGGAAAAGAGGAAAAACTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01057	53414	57154	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001057s00032942.1	PF02357.14	NusG	114	218	3.20E-08
Glyur001057s00032942.1	PF00467.24	KOW	298	329	4.20E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.501
SRR1783600	control	4.498
SRR1783602	moderate drought stress	8.756
SRR1811619	moderate drought stress	8.748

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.957
DRR006520	Root Summer glycyrrhizin high producing strain	6.668
DRR006521	Root Winter glycyrrhizin high producing strain	15.145
DRR006522	Root Winter glycyrrhizin high producing strain	14.754
DRR006523	Root Summer glycyrrhizin low producing strain	8.211
DRR006524	Root Summer glycyrrhizin low producing strain	8.497
DRR006525	Leaf Summer glycyrrhizin high producing strain	37.594
DRR006526	Leaf Summer glycyrrhizin high producing strain	37.382

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.537
SRR2868004	Drought Stress (root)	10.188
SRR2967015	Control (root)	12.902

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	43.668
SRR9715740	Leaf	66.129
SRR9715741	Leaf	24.430
SRR9715739	Root	2.243
SRR9715742	Root	3.899
SRR9715743	Root	2.903

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.016
SRR8749028	MeJA induced 9h	25.014
SRR8749029	MeJA induced 9h	15.468
SRR8749030	Uninduced	23.449
SRR8749031	Uninduced	17.507
SRR8749032	Uninduced	22.890

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.100
SRR8400027	Control - Root	9.755