Gene detail

Gene detail information of Glyur001057s00032941

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G01090.1	2.00E-51	Concanavalin A-like lectin family protein
NR	XP_007133954.1	3.49E-151	hypothetical protein PHAVU_010G006300g [Phaseolus vulgaris]
COG	YP_003890765.1	1.00E-06	legume lectin beta domain-containing protein [Cyanothece sp. PCC 7822]
Swissprot	tr\|Q9LSS0\|LRK17_ARATH	1.00E-12	L-type lectin-domain containing receptor kinase I.7 (Precursor)
trEMBL	tr\|V7AM55\|V7AM55_PHAVU	1.00E-151	Uncharacterized protein {ECO:0000313\|EMBL:ESW05948.1}

Sequence

Transcript Sequence

>Glyur001057s00032941.1
ATGGCAGAAGCATTTACCACTTCCCATTACTTCAGGGTCTTAATTTTCATCATCTTATCCCTCAAAGCCCTGGCTTTTGACCCAATTAATCCATTGTTTTCCTTTGCTGATTTTGAAAAAGATCCAAAATTTAAGTCCAGTGTGGCCCTTTATGGTAATGCAAAGGTTGTCAATGGCGAGTCCAAGATTCATTTCTCTGGTTCAGGTACTGGGAGAGTTATATACAAGAAACCCATCAAGCTTTTTCAAGGTAAACCAAAGCAATTAGCATCTTTTTCCACTTACTTTGCATTTTCAATCCCCTTGGAAAATGGGGGTGGTGGTTTGGCTTTTGTTATGATTCCAACTGGTTCTTCTCAAGGTGGTGTTTTTAATCAAGATTCATCATCTGGGTTTAATCCATTTGGATTGTTGAACAATAGAAAAATTGAAGCTATTGGTGTTGAGCTTAGTGCCTCAAGGGATAATAGAAATGGGATTTTCACTAGTTGTAATGTGGCCATCAATGTGGGTAATTATTCAGTTTTTGCCAAAACATTCAACATGGCTCTAACAAGTGGCACTGAAAATTTAAAGTTGCATGCTTGGATTGATTATGAGGCAAGTTCAAGGAGGTTAGAAGTGAGATTGAGTCAACATGGGAATTCAAGGCCTTCTGATCCATTGTTCTGGCACTCAATTGACTTATCCAATGTGTTGAAGGATAGAGAAATGTTTGTGGGTTTTTTTAGTCCAGTGAAGGAGAAAATTGCTTCTCAAAAAGATTCATGCTTTCTCTATTCATGGAGCTTTGTATTGAGGCATTTTCCACATTCAATTCACTCAGAGCCTCTGGATCCAACCAAAGTTTTTGTAAAGAACACTGAAACTCCAACAACGGTTATTAAACCAACAAGGGCAAGGAGTGATTGCTTTTCAAGAGTTCTTGCTGCAATGATATTTGGTACTGCTTGTGGAGCATTGATGGCATTCATTTTGCTTTATTTGTGGACCATCTTTGGCAACAGACGTGCAGTGGTGCCAGAGGAGTCTGTTATGCAAGATGTTGTTGAGTATAGGAAAGTCAAAATTGTTGTAGATAATAATAAAACCATGGGAGATGGTACTAAGAAGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01057	43860	44975	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001057s00032941.1	PF00139.14	Lectin_legB	33	264	2.00E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.673
SRR1783600	control	6.445
SRR1783602	moderate drought stress	1.551
SRR1811619	moderate drought stress	1.531

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.304
DRR006520	Root Summer glycyrrhizin high producing strain	3.474
DRR006521	Root Winter glycyrrhizin high producing strain	0.200
DRR006522	Root Winter glycyrrhizin high producing strain	0.195
DRR006523	Root Summer glycyrrhizin low producing strain	1.723
DRR006524	Root Summer glycyrrhizin low producing strain	1.586
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.313
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.459

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.446
SRR2868004	Drought Stress (root)	12.676
SRR2967015	Control (root)	7.641

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.803
SRR9715740	Leaf	11.529
SRR9715741	Leaf	8.857
SRR9715739	Root	1.820
SRR9715742	Root	3.212
SRR9715743	Root	2.666

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.876
SRR8749028	MeJA induced 9h	0.240
SRR8749029	MeJA induced 9h	0.055
SRR8749030	Uninduced	0.086
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.051

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.547
SRR8400027	Control - Root	12.334