Gene detail information of Glyur001056s00029280 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18230.1 | 8.00E-68 | Octicosapeptide/Phox/Bem1p family protein |
| NR | XP_004512883.1 | 0 | PREDICTED: probable serine/threonine-protein kinase tsuA-like [Cicer arietinum] |
| trEMBL | tr|G7KMK4|G7KMK4_MEDTR | 0 | Octicosapeptide/phox/Bem1p family protein {ECO:0000313|EMBL:AES76617.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01056 | 62778 | 66029 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001056s00029280.1 | PF00564.19 | PB1 | 70 | 166 | 2.90E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.806 |
| SRR1783600 | control | 12.629 |
| SRR1783602 | moderate drought stress | 20.085 |
| SRR1811619 | moderate drought stress | 19.790 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.634 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.682 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.322 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.362 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.086 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.063 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.751 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.681 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.594 |
| SRR2868004 | Drought Stress (root) | 19.015 |
| SRR2967015 | Control (root) | 23.574 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.938 |
| SRR9715740 | Leaf | 0.893 |
| SRR9715741 | Leaf | 1.351 |
| SRR9715739 | Root | 0.663 |
| SRR9715742 | Root | 7.153 |
| SRR9715743 | Root | 6.306 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.668 |
| SRR8749028 | MeJA induced 9h | 0.861 |
| SRR8749029 | MeJA induced 9h | 2.202 |
| SRR8749030 | Uninduced | 0.521 |
| SRR8749031 | Uninduced | 0.093 |
| SRR8749032 | Uninduced | 0.298 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.589 |
| SRR8400027 | Control - Root | 2.930 |