Gene detail information of Glyur001054s00021679 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G79580.3 | 3.00E-19 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein |
| NR | XP_003531470.1 | 4.75E-78 | PREDICTED: protein SOMBRERO-like [Glycine max] |
| Swissprot | tr|Q9MA17|SMB_ARATH | 2.00E-21 | Protein SOMBRERO |
| trEMBL | tr|I1KTT9|I1KTT9_SOYBN | 2.00E-78 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G17140.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01054 | 85239 | 88728 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.463 |
| SRR1783600 | control | 0.606 |
| SRR1783602 | moderate drought stress | 0.900 |
| SRR1811619 | moderate drought stress | 1.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.485 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.541 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.871 |
| SRR2868004 | Drought Stress (root) | 10.576 |
| SRR2967015 | Control (root) | 9.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.251 |
| SRR9715740 | Leaf | 1.022 |
| SRR9715741 | Leaf | 0.094 |
| SRR9715739 | Root | 0.542 |
| SRR9715742 | Root | 0.768 |
| SRR9715743 | Root | 0.506 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 171.112 |
| SRR8749028 | MeJA induced 9h | 232.579 |
| SRR8749029 | MeJA induced 9h | 151.048 |
| SRR8749030 | Uninduced | 282.730 |
| SRR8749031 | Uninduced | 112.068 |
| SRR8749032 | Uninduced | 122.989 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.129 |
| SRR8400027 | Control - Root | 1.031 |