Gene detail information of Glyur001054s00021677 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G44600.1 | 3.00E-87 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| NR | XP_004488592.1 | 0 | PREDICTED: probable spermidine synthase-like isoform X1 [Cicer arietinum] |
| COG | YP_003829658.1 | 6.00E-12 | spermidine synthase [Butyrivibrio proteoclasticus B316] |
| trEMBL | tr|K7L734|K7L734_SOYBN | 4.00E-170 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G17160.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01054 | 68879 | 79527 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.933 |
| SRR1783600 | control | 6.003 |
| SRR1783602 | moderate drought stress | 2.518 |
| SRR1811619 | moderate drought stress | 2.576 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.058 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.950 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.550 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.627 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.905 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.999 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 24.771 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 24.355 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.171 |
| SRR2868004 | Drought Stress (root) | 1.962 |
| SRR2967015 | Control (root) | 3.069 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.550 |
| SRR9715740 | Leaf | 11.507 |
| SRR9715741 | Leaf | 9.045 |
| SRR9715739 | Root | 1.152 |
| SRR9715742 | Root | 1.573 |
| SRR9715743 | Root | 1.116 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.728 |
| SRR8749028 | MeJA induced 9h | 3.619 |
| SRR8749029 | MeJA induced 9h | 2.342 |
| SRR8749030 | Uninduced | 1.211 |
| SRR8749031 | Uninduced | 0.298 |
| SRR8749032 | Uninduced | 0.186 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.211 |
| SRR8400027 | Control - Root | 5.888 |