Gene detail information of Glyur001054s00021670 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G18370.1 | 6.00E-27 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
| NR | AFK45186.1 | 2.87E-58 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9ZPW9|NLTP8_ARATH | 2.00E-34 | Non-specific lipid-transfer protein 8 (Precursor) |
| trEMBL | tr|I3SY44|I3SY44_LOTJA | 1.00E-58 | Non-specific lipid-transfer protein {ECO:0000256|RuleBase:RU000628} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01054 | 11280 | 11627 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001054s00021670.1 | PF14368.1 | LTP_2 | 13 | 104 | 2.30E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 273.103 |
| SRR1783600 | control | 273.348 |
| SRR1783602 | moderate drought stress | 201.292 |
| SRR1811619 | moderate drought stress | 196.924 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.686 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.110 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.110 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.313 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.635 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.636 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.267 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.266 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 706.608 |
| SRR2868004 | Drought Stress (root) | 349.141 |
| SRR2967015 | Control (root) | 315.327 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.208 |
| SRR9715740 | Leaf | 0.571 |
| SRR9715741 | Leaf | 1.486 |
| SRR9715739 | Root | 1642.936 |
| SRR9715742 | Root | 480.362 |
| SRR9715743 | Root | 698.974 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.568 |
| SRR8749028 | MeJA induced 9h | 5.901 |
| SRR8749029 | MeJA induced 9h | 1.308 |
| SRR8749030 | Uninduced | 3.085 |
| SRR8749031 | Uninduced | 0.733 |
| SRR8749032 | Uninduced | 1.188 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2088.718 |
| SRR8400027 | Control - Root | 1483.079 |