Gene detail information of Glyur001053s00027300 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G20030.2 | 2.00E-70 | Pathogenesis-related thaumatin superfamily protein |
| NR | XP_003625706.1 | 5.88E-147 | Thaumatin-like protein [Medicago truncatula] |
| Swissprot | tr|Q9FSG7|TP1A_MALDO | 9.00E-120 | Thaumatin-like protein 1a (Precursor) |
| trEMBL | tr|G7L3Y5|G7L3Y5_MEDTR | 3.00E-147 | Allergen Pru protein, putative {ECO:0000313|EMBL:AES81924.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01053 | 84672 | 86529 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001053s00027300.1 | PF00314.12 | Thaumatin | 27 | 240 | 8.90E-84 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.629 |
| SRR1783600 | control | 0.593 |
| SRR1783602 | moderate drought stress | 5.915 |
| SRR1811619 | moderate drought stress | 6.052 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.280 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.107 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.236 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.237 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 90.038 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 90.070 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.125 |
| SRR2868004 | Drought Stress (root) | 19.952 |
| SRR2967015 | Control (root) | 3.037 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 67.446 |
| SRR9715740 | Leaf | 47.013 |
| SRR9715741 | Leaf | 165.473 |
| SRR9715739 | Root | 1.855 |
| SRR9715742 | Root | 7.760 |
| SRR9715743 | Root | 6.527 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 268.046 |
| SRR8749028 | MeJA induced 9h | 2966.413 |
| SRR8749029 | MeJA induced 9h | 645.871 |
| SRR8749030 | Uninduced | 3361.039 |
| SRR8749031 | Uninduced | 2243.632 |
| SRR8749032 | Uninduced | 1651.494 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 49.681 |
| SRR8400027 | Control - Root | 64.071 |