Gene detail

Gene detail information of Glyur001053s00027294

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G03530.1	2.00E-73	RAB GTPase homolog C2A
NR	CAA98163.1	2.59E-113	RAB1X [Lotus japonicus]
COG	YP_007670739.1	2.00E-07	Ras family protein [Polaribacter sp. MED152]
Swissprot	tr\|O49841\|RAC2A_ARATH	5.00E-104	Ras-related protein RABC2a
trEMBL	tr\|Q40206\|Q40206_LOTJA	1.00E-113	RAB1X {ECO:0000313\|EMBL:CAA98163.1}

Sequence

Transcript Sequence

>Glyur001053s00027294.1
GCTTTAACACCTAAGGTTTACTAATTGGCAGCTAGCATCCTCTGTTTTGTCACCTTAATTAAAAAGGTAATGTAACATGATGATAGCACAACGCGAGAGAAAAAGCAACCGAGTTCAAAGTTAAACAAAGGTGACCTGTGCTATAAGCTCTACTTGAACAGCAGCATTGATTTCAGCATCTAAATAAACCACGCCAATCCCTGCCTCACACGTGGGGCATGGAGTTGAGACAATAACCTTGCATTCCACAGAAAAAGGCACCGCATGTAGTTGGGATGGGAACCTCAAAAATAGAAAACAGAAATATATAATATGTGACACACACAACAGAAAAGAAAAGAATCAATACGTTGGTGTAGTGTGTCAGCTCGGAATAGGTGATTGTTCCTGAACTCAAGCAAACGGTAGCAGTTTACTTTCCTTTTAGCTTCTCTCTCACTTTCTCTCTCCTTACACGCAGCAAATAAATGAAAAGATGCTGCTGAGGTGATGAGTGATGATGCCCCATTGCACTTTCCTATTTACAGGGTAGAGCCTACCCCTCAAAGCCTTTCTCTTATCTCTTCTTCTCTGCCCCCATTTTTCTCTTTCTCTTTCAATCTTTCTTTCTTTCTTCCTTCACTTGCACACGTACCTCTCACTGTACTTTCTAGAGACAGGCACAGACAAAGATAACATTTTNAGTATTTAGAGGAATAGGGTGAGAGAAATGAGTTCATCCTCAAGTCAGGGCAGTGGCTATGATCTCTCTTTCAAGATCTTGTTGATCGGAGATTCTGGGGTGGGAAAAAGTAGCCTACTTGTCAGCTTCATTTCCNGCTCTGTTGAAGATCTTTCACCCACCATTGGTGTTGATTTTAAGATCAAAATGCTCCAAGTAGGTGGGAAGAGATTAAAACTAACAATTTGGGACACAGTTTATGATGTCACAAAGAGAGAAACCTTTACAAATTTATCAGAAGTGTGGTCTAAGGAACTGGAACTCTATTCAACTAATCAGGATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAGAGATTCTGAAAGGGCTGTGAGCACAGAAGAGGGCTTAGCTCTTGCTAAAGAATTGGGGTGTTTGCTTTTTGAATGTAGTGCTAAAACTCGAGAAAATGTGGAGAAGTGCTTTGAAGAACTTGCTCTAAAGATAATGGAAGCTCCTAGTCTCTTGGAAGAAGGATCAACAGCAGTAAAAAGGAATGTTTTAAAACAGAAACAAGAACCCCAACCATCCCAAAATGGTGGGTGTTGCTCTTAAAATGCTGCATTGTGGACATTGAATCTTAACTAGCACATCTTGGACAATTCCTGTATATGTAAGCTTCTTCCTGAGTTTCTCACTGCTGCCAGTGTGTTTTGGTTGCTCAGTTACTTGTACTACCACAATGGGGAAATTGGCAACAATGAAGTGTGTTAGCTTGTGTAAATTTGTTTGCCTATGAAGGATGTATCATTTGTGTGTTGCTCCCAAGTCCCAAGACACAAGTCAATCATGATACTGCAAATGCAGATTCATGCAATTTTATTATGAAAACTGCAACTAATTAATCCAATTCGGCCGCATCAATCAGTAGTTGAAACACAGTTTCTGAAATAAGATGGCATTAATCACCTCTAATCAGATGCTGCCAACAACATAGCTAATATACCCACAATTACTCTGACTAGACAATGTGAAAGTGAAAACTATCTCAATTTTTCTACACATCTGTCCAGCTATATCAAATCTTTCAGATCCTTGGAAGTTTCTTCAATTTTTGGAGAAATTACAAGATTAATTAAAAGAAAGTGATTAGTTTGCCTTTGCAAACTGCACAAAACACCATGTTCCATAAGAAATGGGAATGCAGGATGAATTGTCAGTACCTGCAAGAGCTGATAAGCTGTAGCATGCCGGTTTCAGAGGCACTGTTGTTTGAGCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01053	54457	58664	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0007165 signal transduction

GO:0007264 small GTPase mediated signal transduction

GO:0015031 protein transport

cellular_component

GO:0005622 intracellular

GO:0016020 membrane

molecular_function
GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001053s00027294.1	PF00071.17	Ras	16	69	7.40E-14
Glyur001053s00027294.1	PF00071.17	Ras	70	155	8.30E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.476
SRR1783600	control	10.681
SRR1783602	moderate drought stress	9.236
SRR1811619	moderate drought stress	9.216

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.253
DRR006520	Root Summer glycyrrhizin high producing strain	24.858
DRR006521	Root Winter glycyrrhizin high producing strain	2.400
DRR006522	Root Winter glycyrrhizin high producing strain	2.419
DRR006523	Root Summer glycyrrhizin low producing strain	11.618
DRR006524	Root Summer glycyrrhizin low producing strain	11.437
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.682
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.392

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.314
SRR2868004	Drought Stress (root)	29.630
SRR2967015	Control (root)	26.071

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.508
SRR9715740	Leaf	5.881
SRR9715741	Leaf	4.762
SRR9715739	Root	4.761
SRR9715742	Root	8.791
SRR9715743	Root	7.571

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.390
SRR8749028	MeJA induced 9h	0.999
SRR8749029	MeJA induced 9h	0.948
SRR8749030	Uninduced	4.340
SRR8749031	Uninduced	3.963
SRR8749032	Uninduced	4.954

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.092
SRR8400027	Control - Root	35.197