Gene detail information of Glyur001053s00027292 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G03510.1 | 2.00E-37 | C2H2-type zinc finger family protein |
| NR | XP_003554400.1 | 3.46E-86 | PREDICTED: zinc finger protein ZAT5-like [Glycine max] |
| Swissprot | tr|Q681X4|ZAT5_ARATH | 7.00E-45 | Zinc finger protein ZAT5 |
| trEMBL | tr|K7MZ35|K7MZ35_SOYBN | 1.00E-85 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G37010.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01053 | 50015 | 50959 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
| EAR motif-containing Proteins | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001053s00027292.1 | PF13912.1 | zf-C2H2_6 | 110 | 134 | 1.60E-06 |
| Glyur001053s00027292.1 | PF13912.1 | zf-C2H2_6 | 206 | 231 | 2.60E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.526 |
| SRR1783600 | control | 0.457 |
| SRR1783602 | moderate drought stress | 0.443 |
| SRR1811619 | moderate drought stress | 0.414 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.768 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.827 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.118 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.115 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.470 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.221 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.280 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.176 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.350 |
| SRR2868004 | Drought Stress (root) | 4.146 |
| SRR2967015 | Control (root) | 3.349 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.718 |
| SRR9715740 | Leaf | 0.313 |
| SRR9715741 | Leaf | 0.527 |
| SRR9715739 | Root | 0.169 |
| SRR9715742 | Root | 0.928 |
| SRR9715743 | Root | 0.779 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.187 |
| SRR8749028 | MeJA induced 9h | 0.369 |
| SRR8749029 | MeJA induced 9h | 1.219 |
| SRR8749030 | Uninduced | 0.634 |
| SRR8749031 | Uninduced | 0.477 |
| SRR8749032 | Uninduced | 0.539 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.609 |
| SRR8400027 | Control - Root | 1.391 |