Gene detail

Gene detail information of Glyur001053s00027288

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G36830.1	5.00E-99	gamma tonoplast intrinsic protein
NR	AAF82790.1	4.70E-148	water-selective transport intrinsic membrane protein 1 [Lotus japonicus]
COG	YP_007100376.1	1.00E-36	MIP family channel protein [Chroococcidiopsis thermalis PCC 7203]
Swissprot	tr\|Q9FY14\|TIP1_MEDTR	2.00E-144	Probable aquaporin TIP-type
trEMBL	tr\|Q9LKJ6\|Q9LKJ6_LOTJA	2.00E-148	Water-selective transport intrinsic membrane protein 1 {ECO:0000313\|EMBL:AAF82790.1}

Sequence

Transcript Sequence

>Glyur001053s00027288.1
ACACAGGCTGTCACCAAATAGGATTCTTTCCCTTCTGCCTTGGTATTTTTTAAAATCTTGATTCCTCTCAAATTTGGAACTATATACTGTAAATGAATTTCCAATATTGAAAGAGTGTTACCGGTAACCGGGTAGAGCCGGTGGAAGTGGAGGCCTGTCCTTCTCCATATAAGAGAGCGAAGGAAGCGAAATTAAACCAGTAGCAGGCAGAGAGCGAAACAGAGAACGCTTAATTTCCAGTGACTGAGAGTGAGTAAGTGAGTGGTCGTGTTCGTTGGTGTTCTCGATCCTTCTCATCACACAAACACACGAAGATGCCGATCCGAAACATCGCTATCGGAAATCCCCAAGAGGTGACTCACGCAGACACCTTGAAGGCGGGTCTGGCTGAGTTCATCTCCACCCTCATCTTCGTCTTCGCCGGCTCAGGCTCCAGCATCGCATACAACAAGCTCACCGACAACGGTGCANCCACCCCCGCCGGTCTTATCGCCGCCTCCATCGCCCATGCATTCGCCCTCTTCGTCGCCGTCTCCGTCGGTGCCAACATCTCCGGTGGCCACGTCAACCCCGCCGTCACCTTCGGCGCCTTCGTCGGCGGCAACATCAGCTTGCTCCGCGGCATCGTCTACATCATCGCCCAGCTCCTCGGCTCCATCGTCGCCTCCTTGCTCCTCCTCTTCGTCACCGAACTCTCTGTTCCAGCATTCGGACTCTCCGCTGGAGTTGGAGTGGGTAACGCTTTGGTGTTCGAGATCGTGATGACCTTCGGGTTGGTGTACACGGTGTACGCCACGGCCGTTGACCCCAANAAGGGTAATTTGGGAATTATTGCCCCCATCGCTATTGGTTTCATCGTTGGCGCCAACATTTTGGCGGGTGGGGCCTTCAGTGGAGCATCCATGAACCCGGCCGTTTCATTCGGACCAGCTGTTGTGAGCTGGAGCTGGGAGAACCACTGGATCTACTGGGTTGGGCCTCTCGTCGGTGGTGGGCTTGCTGGGCTTATCTACGAACTCATCTTCATCAACCAGACCCACGAGCAGCTCCCTTCCACTAACTACTAGAAGGAAGTGAAAATTGAAATTGAAAACTTGTGGATCATTGAATTTCTCTGATTTCTTCTTCTTGTGCATGTTTTCCTTCCTTGTTTCTCTCTCTTTTTTTTTTACCATCGAGGGTTGTTCCTTTTGTGTTTCAAAAAAAAAATGGTGGCCGTTGATCTTTGGTTGTATGGTTGGTGATCATGAAATTCTTNTTTTGCTAAATTATTTTGTACATGGTCCGGCTCTCAACGGGTCCACCACTTAATGTATTCGGGTCTGGTTGGTTGTANGATTCCCCTTTTCTCTTTTCTTTTTCTTGCACCCTCTCTGAATTAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01053	32394	33904	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001053s00027288.1	PF00230.15	MIP	14	233	5.30E-76

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2700.319
SRR1783600	control	2703.757
SRR1783602	moderate drought stress	2539.281
SRR1811619	moderate drought stress	2511.006

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1814.041
DRR006520	Root Summer glycyrrhizin high producing strain	1793.435
DRR006521	Root Winter glycyrrhizin high producing strain	51.972
DRR006522	Root Winter glycyrrhizin high producing strain	50.506
DRR006523	Root Summer glycyrrhizin low producing strain	895.085
DRR006524	Root Summer glycyrrhizin low producing strain	892.306
DRR006525	Leaf Summer glycyrrhizin high producing strain	380.841
DRR006526	Leaf Summer glycyrrhizin high producing strain	380.441

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3263.533
SRR2868004	Drought Stress (root)	2927.973
SRR2967015	Control (root)	2212.881

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1014.984
SRR9715740	Leaf	1019.060
SRR9715741	Leaf	739.031
SRR9715739	Root	4142.739
SRR9715742	Root	1521.332
SRR9715743	Root	1919.063

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	110.714
SRR8749028	MeJA induced 9h	450.280
SRR8749029	MeJA induced 9h	190.630
SRR8749030	Uninduced	48.948
SRR8749031	Uninduced	5.291
SRR8749032	Uninduced	37.016

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2214.228
SRR8400027	Control - Root	1979.113