Gene detail

Gene detail information of Glyur001053s00027284

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G09880.1	Protein phosphatase 2A regulatory B subunit family protein
NR	XP_004494078.1	PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform-like [Cicer arietinum]
Swissprot	tr\|O04376\|2A5B_ARATH	Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform
trEMBL	tr\|I1JPR3\|I1JPR3_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G34240.1}

Sequence

Transcript Sequence

>Glyur001053s00027284.1
ACACAATGCACCTCTCTATTCTCTTTATTAATTTCCCCCCATAACATCTCAAAGTCACTCGTGGACACGGACACGGACACAAGCACACGCTCTCTCTGTATTTACCAGTCACCACTCATTTCTTCNCCGGAACGATTTCCGACCGATCAACCGGCAATAATTCCGTCGANCCCGCTCCGATCACTCGCCACGCTGCAGCACCCAACACTCCTCCTCTGTTTCCTCAGATCCNTCGTCGTTTGAGTTGTGATGCGAAAATCGTGGGAAGAGAAGCATTCACAGATTAGGAAGACTCTACGACCCTGTAGCTTCCATCTTCCACAACCCCCTCATCATTACCAATAACCACTTCCCAATTCGTTAGCTTAGGGTTAGGGTTCGTCTCAACAACAAAACAATGTTCAAGAGAATCATGAAGGGAGGGCAAAAAAAGCCCTCCAAATCGGACTCAACAGATCCATCGACCTACGGGTACGGTCCTCCGGTGACCAACCCGGCGGCGACGGTTACCGTACCTCCGCCGTCGGGAACCATCGAACCGCTCCCTCTATTCCGCGACGTTCCGGTTTCCGAGAGGCAGAACCTGTTCCTCCGGAAGCTGCAGATTTGCTGCCACGTGTTGGATTTCTCCGACACGTTGAAATCGGTTCGGGAGAAGGAAATCAAGAGGCAGTCGCTGATGGAGCTTGTGGATTTCATTCAATCCGGTTCGGGGAAGTTAACGGAGACTTGCCAGGAAGAGATGATCAAAATGGTATCGGCGAACATTTTCCGGTGCCTGCCGCCGGCGTCGCACGAGAACACCGGGCAAGAGAANACCGATCCGGAAGAAGAGGAACCGTGTTTGGAGCCAGCATGGCCCCATTTGCAGCTCGTCTACGAGCTTCTCCTCAGATACGTTGTTTCCTCTGACACTGATACGAAGGTAGCTAAGCGTTACATTGATCATTCCTTTGTGCTGAAATTGCTTGATTTGTTTGACTCTGAGGACCCCAGAGAGCGTGAGTATTTGAAATCCATCTTGCATCGTGTGTATGGTAAATTCATGGTTCATAGGCCGTTTATTAGGAAGGCCATTAACAATATCTTTTACCGGTTTATATATGAGACTGAGAGGCATAGTGGGATTGGGGAGCTTCTGGAGATTCTTGGGAGCATCATTAATGGGTTTGCGCTTCCNATGAAGGAGGAGCACAAGCTGTTCCTTGTGAGGGCGTTGTTGCCTCTGCATAAGCCTAAGCCTGTTACTGTTTACCACCAGCAGTTGTCCTACTGCATCTCTCAGTTTGTTGAGAAGGATTACAAGCTGGCGGATACCGTTATTAGGGGCTTGTTGAAGTACTGGCCCGTTACCAATTGCCAGAAGGAAGTTCTGTTCCTTGGGGAGCTTGAGGAGGTGCTGGAGGCCACGCAGGCTGCTGAATTCCAACGCTGCATGGTTCAACTTTTTAGACAGATAGCCCGTTGCCTCAATAGCCCACACTTCCAGGTTGCAGAACGAGCCCTNTTTTTGTGGAATAATGAGCACATTGTCGGTTTAATTGCCCAAAACAGGACTGTAGTATTACCCATAATATTCGAAGCATTGGAGAAAAATATCAAGTCTCATTGGAACCAGGCTGTTCACGGGCTGACTGTGAATGTTCGGAAAATGTTCATGGAAATGGATGCTGAATTGTTTGAAGATTGCCAGAGGCAGTATGAAGAGAGAGAGGCTAAAGCCAAAGAGGTGGAAGAGCAGCGGGANTTGAATTGGAAGAGACTGGCAGATGCAGCTGCACAGAATGGGGCAGATATGGTCACAGCTTAGCCAAATTAAAATTACTTTGCTGTGTTGAGGATTGTATCCGCTCCCTCGCCATTTTGGTGCCATTATTTATTAATTTCTTTCTTTCCCTCGTAATTTCTTTTTCCTCTCCATTTTCTCAGTTGGATAATCAGCAAGTTAAAGAAAGCAGTGATTAATGTAACTTAAAAAAAAAAATGTATTGGACGTTGTTAGCAATGTCTGCAGGTTAAGAATGTTTTGTGAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01053	742	5913	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

cellular_component
GO:0000159 protein phosphatase type 2A complex

molecular_function

GO:0005488 binding

GO:0008601 protein phosphatase type 2A regulator activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001053s00027284.1	PF01603.15	B56	48	461	2.20E-180

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.468
SRR1783600	control	21.677
SRR1783602	moderate drought stress	15.435
SRR1811619	moderate drought stress	15.360

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.129
DRR006520	Root Summer glycyrrhizin high producing strain	20.661
DRR006521	Root Winter glycyrrhizin high producing strain	10.645
DRR006522	Root Winter glycyrrhizin high producing strain	10.516
DRR006523	Root Summer glycyrrhizin low producing strain	31.523
DRR006524	Root Summer glycyrrhizin low producing strain	31.618
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.960
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.928

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.647
SRR2868004	Drought Stress (root)	28.341
SRR2967015	Control (root)	27.012

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	48.276
SRR9715740	Leaf	31.740
SRR9715741	Leaf	48.080
SRR9715739	Root	32.768
SRR9715742	Root	73.678
SRR9715743	Root	63.219

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	37.379
SRR8749028	MeJA induced 9h	33.362
SRR8749029	MeJA induced 9h	31.453
SRR8749030	Uninduced	13.525
SRR8749031	Uninduced	7.225
SRR8749032	Uninduced	7.515

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.665
SRR8400027	Control - Root	25.792