Gene detail information of Glyur001052s00025682 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G00740.1 | 0 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| NR | KEH18952.1 | 0 | methyltransferase [Medicago truncatula] |
| Swissprot | tr|Q93W95|PMTD_ARATH | 0 | Probable methyltransferase PMT13 |
| trEMBL | tr|A0A072TNH6|A0A072TNH6_MEDTR | 0 | Methyltransferase {ECO:0000313|EMBL:KEH18952.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01052 | 54343 | 59458 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001052s00025682.1 | PF03141.11 | Methyltransf_29 | 92 | 592 | 4.30E-202 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 57.465 |
| SRR1783600 | control | 57.682 |
| SRR1783602 | moderate drought stress | 32.678 |
| SRR1811619 | moderate drought stress | 32.586 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 34.403 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 33.740 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.442 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.850 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 28.508 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 28.663 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 23.034 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.821 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 41.337 |
| SRR2868004 | Drought Stress (root) | 36.495 |
| SRR2967015 | Control (root) | 37.140 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 22.127 |
| SRR9715740 | Leaf | 21.357 |
| SRR9715741 | Leaf | 22.741 |
| SRR9715739 | Root | 25.484 |
| SRR9715742 | Root | 42.039 |
| SRR9715743 | Root | 40.875 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.732 |
| SRR8749028 | MeJA induced 9h | 19.923 |
| SRR8749029 | MeJA induced 9h | 7.754 |
| SRR8749030 | Uninduced | 4.206 |
| SRR8749031 | Uninduced | 2.114 |
| SRR8749032 | Uninduced | 2.012 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 47.086 |
| SRR8400027 | Control - Root | 53.967 |