Gene detail information of Glyur001052s00025679 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G11740.1 | 1.00E-54 | Ubiquitin-like superfamily protein |
| NR | XP_004510860.1 | 0 | PREDICTED: uncharacterized protein LOC101507241 isoform X1 [Cicer arietinum] |
| trEMBL | tr|A0A072TZJ6|A0A072TZJ6_MEDTR | 0 | Ara4-interacting protein {ECO:0000313|EMBL:KEH18955.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01052 | 41035 | 45903 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001052s00025679.1 | PF14555.1 | UBA_4 | 8 | 46 | 1.40E-07 |
| Glyur001052s00025679.1 | PF00789.15 | UBX | 456 | 535 | 4.30E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.133 |
| SRR1783600 | control | 9.328 |
| SRR1783602 | moderate drought stress | 5.670 |
| SRR1811619 | moderate drought stress | 5.387 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.099 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.817 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.522 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.509 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.985 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.351 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.101 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.208 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.178 |
| SRR2868004 | Drought Stress (root) | 8.405 |
| SRR2967015 | Control (root) | 12.257 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.652 |
| SRR9715740 | Leaf | 1.114 |
| SRR9715741 | Leaf | 1.424 |
| SRR9715739 | Root | 4.757 |
| SRR9715742 | Root | 13.441 |
| SRR9715743 | Root | 13.564 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.114 |
| SRR8749028 | MeJA induced 9h | 9.387 |
| SRR8749029 | MeJA induced 9h | 7.490 |
| SRR8749030 | Uninduced | 2.128 |
| SRR8749031 | Uninduced | 0.429 |
| SRR8749032 | Uninduced | 1.812 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.851 |
| SRR8400027 | Control - Root | 22.283 |