Gene detail information of Glyur001052s00025678 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G00750.1 | 0 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| NR | KEH18956.1 | 0 | methyltransferase [Medicago truncatula] |
| Swissprot | tr|Q9ZPH9|PMTF_ARATH | 0 | Probable methyltransferase PMT15 |
| trEMBL | tr|A0A072TP47|A0A072TP47_MEDTR | 0 | Methyltransferase {ECO:0000313|EMBL:KEH18956.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01052 | 34712 | 40224 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001052s00025678.1 | PF03141.11 | Methyltransf_29 | 119 | 630 | 8.40E-225 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.982 |
| SRR1783600 | control | 18.924 |
| SRR1783602 | moderate drought stress | 13.215 |
| SRR1811619 | moderate drought stress | 13.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.645 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.463 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.198 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.143 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.061 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.303 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 54.619 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 55.069 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.727 |
| SRR2868004 | Drought Stress (root) | 12.306 |
| SRR2967015 | Control (root) | 20.962 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 30.753 |
| SRR9715740 | Leaf | 42.371 |
| SRR9715741 | Leaf | 26.415 |
| SRR9715739 | Root | 12.723 |
| SRR9715742 | Root | 29.579 |
| SRR9715743 | Root | 25.495 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.282 |
| SRR8749028 | MeJA induced 9h | 0.385 |
| SRR8749029 | MeJA induced 9h | 0.128 |
| SRR8749030 | Uninduced | 0.173 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.076 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 22.003 |
| SRR8400027 | Control - Root | 25.516 |