Gene detail

Gene detail information of Glyur001052s00025677.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G61060.1	4.00E-101	phloem protein 2-A13
NR	KEH17679.1	5.13E-176	F-box protein PP2-A13 [Medicago truncatula]
Swissprot	tr\|Q9LEX0\|P2A13_ARATH	9.00E-126	F-box protein PP2-A13
trEMBL	tr\|A0A072TJF7\|A0A072TJF7_MEDTR	2.00E-176	F-box protein PP2-A13 {ECO:0000313\|EMBL:KEH17679.1}

Sequence

Transcript Sequence

>Glyur001052s00025677.1
CTGATCTCCAAATCCACTTTGTGAAAATCTCAACTCTCTGAAAGAAAGAGAGTTGCCTAAAAAGTTCATGTATTTGATTCCAGCTTCTTGGTGCAATGTTCAGGTGCTCAAACTCTAGAGGCTAATTTAGAATCTGGGTGTTTGAAAATCCAAGAGCTTTGCATTCAACATTTTGGGGGGGGGGGGGGCCTTAAAACTGGTTTGGTCATTGGTGTGTGTAAAATTGACAAATTCAGGTCAAAGTTTAAGTTTTGACTTGAATTCATAATCTGGGTGTGTGAAATCTGAGAGTTTTGCATATTTTTTTTGGGGGTGTGGGATAAAGTGGTTTGATTTGGTGGGTGCTAAACTAATATGGGTGCTAATTTTTCCTCTTGTGTTTGTGATGGGGATTCTGCTCCTATGAGGCCAAGGCTTGGGGATATACCTGAGAACTGTATGGCATTGGTGTTGATGTACTTGGACCCACCAGATATATGTAAGCTAGCACGACTGAACAAGGCATTCCATGATGCTTCCTTTGCTGATTTCATCTGGGAATCCAAGTTGCCTTTGAATTACAAGTTCATCATGGGAAAAGCTTTGGAATTGGAGGATACTTCTATCACAAAATTGGGGAAGAAAGATATTTATGNAAGACTCTGCAGGCCTAACTTGTTTGACAATGGAACCAAGGAAATTTGGCTAGATAAGAGGACGGGTGGAGTTCGTTTGGCAATTTCTTCCAAAGCGTTAAGGATTACGGGGATAGATGATCGTAGATATTGGAATCACATTTCCACCCAAGAGACAAGGTTCCAGACAGTTGCTTATCTTCAACAAATTTGGTGGCTTGAAGTGGAAGGAGACATTGAATTCCAATTTCCACATGGGACATATGGTGTGTTCTTCAGACTTCACCTTGGCAGGTCATCCAAGAAGCTGGGTCGTCGAGTTTGTAAAACCGAGCACATCCATGGCTGGGACATAAAACCTGTGAAGTTTCAGGTGACAACTTCTGATGGTCAACATGTTGTATCCCATTGTCATTTGGATAATCCAGGGTACTGGGTCCTCTACCATGCAGGAAACTTTGTCTCTAGTAGTTCTAATGATTTGATGAAGATCAAGTTTTCATTGACTCAAATCGATTGTACACATACCAAAGGTGGTTTGTGTGTAGACTCTGTACTTATATNCAATAGAGATGTGAGTAAAGAGGTGTAAATTGTTTTTGTAGGTAGGAAAGTTGAGGCACCTNAGTTTACCTTAGCGATACTGGTAGCAAGGGAGTTCGGTGGAGGTGATACTTCCATATATAGCCCCCCGAAAAGCTTTCCCATTTGAATTTTTGTTTCTTTGATAAGACAATGTTTCAATTTCAAGGCATAATCTCTAGGTGTGATCACCCGTGTATATCTCCTCCTTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01052	27740	30117	-

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001052s00025677.1	PF14299.1	PP2	119	274	2.20E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.954
SRR1783600	control	0.961
SRR1783602	moderate drought stress	1.931
SRR1811619	moderate drought stress	1.938

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.389
DRR006520	Root Summer glycyrrhizin high producing strain	2.475
DRR006521	Root Winter glycyrrhizin high producing strain	57.735
DRR006522	Root Winter glycyrrhizin high producing strain	55.596
DRR006523	Root Summer glycyrrhizin low producing strain	10.208
DRR006524	Root Summer glycyrrhizin low producing strain	8.916
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.017
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.946

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.342
SRR2868004	Drought Stress (root)	13.216
SRR2967015	Control (root)	24.381

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.580
SRR9715740	Leaf	6.719
SRR9715741	Leaf	10.765
SRR9715739	Root	2.616
SRR9715742	Root	4.428
SRR9715743	Root	3.933

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.605
SRR8749028	MeJA induced 9h	39.179
SRR8749029	MeJA induced 9h	21.541
SRR8749030	Uninduced	23.807
SRR8749031	Uninduced	33.234
SRR8749032	Uninduced	25.756

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.163
SRR8400027	Control - Root	4.289