Gene detail

Gene detail information of Glyur001052s00025671.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G19790.1	2.00E-13	related to AP2 11
NR	XP_004510866.1	2.37E-132	PREDICTED: ethylene-responsive transcription factor ABR1-like [Cicer arietinum]
Swissprot	tr\|Q6J9S1\|RA211_ARATH	2.00E-25	Ethylene-responsive transcription factor RAP2-11
trEMBL	tr\|A0A072TZK4\|A0A072TZK4_MEDTR	5.00E-125	AP2 domain class transcription factor {ECO:0000313\|EMBL:KEH18970.1}

Sequence

Transcript Sequence

>Glyur001052s00025671.1
ATGGTGGCCAAATCAACAAACAAGGCTGCAAGCATGATGAGGAGGTTCATTGGGGTGAGGCAAAGGCCTTCAGGAAGGTGGGTGGCTGAGATCAAAGACTCGTCTCAGCATGTGAGGTTGTGGCTTGGAACCTATGACACACCAGAAGAAGCAGCTAGAGCTTATGATGAAGCAGCTCGAGCCTTGCGCGGTGAAAATGCAAGAACCAACTTTGCACCATCATCATCACTGAACCAATTACAAGCCGCTACAGGGTCTTCCCCTGCACCTTCACCTGCACCCCCTTGTGGATCTGGGTTAAGCTTTGCCTCTTTGAAAGCCAAGTTGAGCAAGAACCTTCAGAGCATTATGGCAAGAGCTAATGACAACAACAACAACAAGTCCTCTTCATCAAAGAGCAGGGTGAGTGACCACTTCACCTTTGCTAGCATATTCAACCGTAGGAGTACTTATCACCACCAACACCACCAACAGTACCAAATCCCTGATATGAAGAACATTGAGAAAGTGGTGCAGCCTAGCATCATTGTTCCCCCTGTAGTTGATGATGTTGTTGATCATCATCATCATCATCATCATTACCTTGCTCCTCCTCCTCCTCCTACTTGCTGGGAAACCTCTAGTACTATCTCTGATTGTAGCTCCGAATGGATCGGGTTCCGGCAACCTGGGTTGGACTCTGATGGGTCTGATATAGGGGAGAATATTAATATTACTAGTGTTGGTGATCAAGGGTTGTTGGAACAACTCATGGGATGGGTTGATACTGATAGCCCTGATAACAACAACAATATTAATAATAGTAATATTTGTGCAAGTACTGAGGAGGAGGGTTCAAGGAGTAAGAGGTTCAAGGTGTCATCTTCTGTGCTTGTTCCTCCAACTTTCTCTGCCTCTACTCCATATGACTCCTGTGGATCCCCTTATAACAGTGGTTATGCCTCTCCATATTGTGCATCCCCATGTAATGGTTATGCCTCTCCATATTATGGTAGGAAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01052	2101	3102	+

Gene family

Gene family	subfamily
Transcription Factors Family	ERF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001052s00025671.1	PF00847.15	AP2	15	65	2.80E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.036
SRR1783600	control	0.110
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.110
DRR006524	Root Summer glycyrrhizin low producing strain	0.221
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.031
SRR2868004	Drought Stress (root)	2.629
SRR2967015	Control (root)	1.020

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.024
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.524
SRR8400027	Control - Root	0.258