Gene detail

Gene detail information of Glyur001050s00033458

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G22600.1	6.00E-50	Late embryogenesis abundant protein (LEA) family protein
NR	XP_004516134.1	4.30E-176	PREDICTED: uncharacterized protein LOC101512941 [Cicer arietinum]
trEMBL	tr\|V7ACP9\|V7ACP9_PHAVU	1.00E-168	Uncharacterized protein {ECO:0000313\|EMBL:ESW03287.1}

Sequence

Transcript Sequence

>Glyur001050s00033458.1
NAATCAAGTTCACAATTCGAAAGAACACAAGAATGATGAACGTTCTAGCGTTGAGTTTGGTGGTGACTTCACTAGCAGCAGCAAGCATGTTCTCTCCAAGTCCCACCACAGAAAATCAAAAGCAAGCACCAGCAAGCACCATCGTGAAAGAAGGTCACAGAGTCGTTGTCGTTGAATACGACCAAGATGGTTACCACAACACCAAAATCTCAATCTCCCCTGAACAACAACAACAAANAGATGACGTGGACTCCACAAGCGTGTTAGAGAACGCCAAAGACAAAATCAAAGAAGCAGCTTCGGTTCTCCCAAACATGGGCCAAGGCATTTCCAACAACGAAAACGCGGCTTTTAACTTCCACGCTCCAAAAGAGCTTATTTGCGACGCATACGGTAAATGCAAGCACAAAATCGCAGGTGCAATGGGAAAAGCACAAGACACGGTTGAGGTAGCACGGGAAGTTGGTAACACCGTTGGTGATACANTGGGTAAGGCTAAAGAAACCGTTTATGAAAAAGCCAACGATGTTAGGGAATACACTAAGGACTCTGTTGAGAAGGGAAAGGAACACGTGGTTAGAAACGTGTCAGAGGTGAGGAATAGTGTGAAGGAAGGTGTGAAGCGTGTGGTGAGGAAGTTGGGGTGGTCGTTGGAGAGTTTTATGGGGGTGGTTAGTTTGTTGGGGTTTGCAACGGCTTATGGGATGTGTGTGTGGATCACGTTTGTGTCGAGCTATGTATTGTCGAGGGTTATGCCGAGGCAACAGTTTGCAGTGGTGCAGAGTAAGATTTACCCGGTTTATTTTAGGGCTATGGGGTATGGTGTTGGGGTTGCTTTGTTGGGGCATGTTTTGGGCCATAGAAAGAGAGTACTGTTTCTTAACAGGGCTGAAATGTTGCAAGCTTACAACCTTCTGGCCTCGCTTCTCATGGTGCTCGCCAATTCTGTTTACTTGGAGCCTCGGGCCACTAAGTTGATGTTCGAAAGGATGAAAATAGAAAAAGAAGAAGGAAGAGGNAGAGACGATATCACAGCTGAACAACGTAACAGCAGAACAGAAGATCATCAGCAACAGCGCTCAGCTCATGACCCTAATAAAAGATCTTCCACAGCTACAGCAGATTCACAACCCACACAAACACAATTAGGAACAGAGCACGATAATGCGGTCAGGGCAAGGATCATCAAGCTCAATAACAAGCTGAAGAAACTGAATTCCTATTCGTCACTCCTTAACATCCTCAACCTCATGTCTCTTACTTGGCATCTCGTCTATTTGGCTCAACGTGTTCACCACCCTTGCTAATTAAGCTAAAAACCAAATACTGTTTTGTTTAGTACTTGTTGCTTTCTGTGTTGGTGTTTGTAGTTGTACCTGTAATGATGTGTTGATATCTGCAAAAGACTGTCACTGTAGTCTCTAGATTTTGTATCTTTCGGGTTTTGGGAGTACTTGCATATAGGTTTTGAATGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01050	83620	86196	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001050s00033458.1	PF13664.1	DUF4149	218	320	4.60E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.049
SRR1783600	control	0.025
SRR1783602	moderate drought stress	0.513
SRR1811619	moderate drought stress	0.527

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.175
DRR006520	Root Summer glycyrrhizin high producing strain	1.848
DRR006521	Root Winter glycyrrhizin high producing strain	128.890
DRR006522	Root Winter glycyrrhizin high producing strain	127.277
DRR006523	Root Summer glycyrrhizin low producing strain	2.911
DRR006524	Root Summer glycyrrhizin low producing strain	2.379
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.126
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.124

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.076
SRR2868004	Drought Stress (root)	0.351
SRR2967015	Control (root)	0.312

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.181
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.074
SRR9715739	Root	0.115
SRR9715742	Root	0.591
SRR9715743	Root	0.642

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.511
SRR8749028	MeJA induced 9h	1.284
SRR8749029	MeJA induced 9h	0.760
SRR8749030	Uninduced	1.048
SRR8749031	Uninduced	0.690
SRR8749032	Uninduced	0.763

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.436
SRR8400027	Control - Root	0.301