Gene detail

Gene detail information of Glyur001049s00033660.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G25900.1	1.00E-133	Homocysteine S-methyltransferase family protein
NR	AFK33865.1	0	unknown [Lotus japonicus]
COG	YP_002462221.1	1.00E-80	homocysteine methyltransferase [Chloroflexus aggregans DSM 9485]
Swissprot	tr\|A4ZGQ8\|HMT1_BRAOT	5.00E-170	Homocysteine S-methyltransferase 1
trEMBL	tr\|I3S0S3\|I3S0S3_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK33865.1}

Sequence

Transcript Sequence

>Glyur001049s00033660.1
GGCCGGTTCGCACCGGTTCGCATCGGTTCCATGACATCTCCAATCCAATACTCAGCTCGAACCGGCTATGGCACCGGTTCCCGGTCGAACCGGTTCGACCGGTCAGTCCGAGCCGAGTTTAATAACACTGATCCTGTGATTTAGTCTTAAAAAGGATCCAAACCTAACAACAAACGCCCCTAATTTCGAGAATTTAGTCGGTATCGTAAATCGTAGATTACCATTATTTTAAAATCTGCGGCCAATAAGCGGCCTCACCAAACCATATTTGACATTTTTTCCATAAAAAAAAAAATTCGGCAGAAATAAGAACCTGAATGCTATTTCGTCCATATTCAATAACCCAACTCCCACCCAACAAACCGCGGCGACTAAGAAGAAAGAAAGGCTCCGCCTCCTCCAACATTTTAACGTGCTCTGTCCGTTTGTCTCTCTATTCATAGCCGCTGCACAGAAACGACGTCGTCGAGGTGAGAGAACGGCGTGTAACATGAAGAGCGAGAAGAAGGCGTCATTGTTGCAGGATCTCATAGAGAATGCGGCAGGAGGTTGTGCTGTTACAGATGGAGGATTCGCCACACAGCTCGAAANGCATGGAGCTTCCATCAATGACCCTCTTTGGAGTGCTCTCTNTTTAATCAAAGAGCCACATCTTATCAAACAGGTTCACTTNGAATATTTGGAGGCTGGTGCAAATATACTGGTTACTTCATCTTACCAGGCTACAATTCCTGGATTTTTGTCCAAGGGGCTTTCAATTGAAGAAGGGGAATTGCTACTAAAGAGGAGTGTCAAATTGGCAGTTGAAGCTCGTGACGGTTTCTGGACTATGGCTAAAACAAATCCTAACAATAAATATAAAAGAGCTTTGGTTGCAGCCTCCATTGGAAGCTATGGGGCTTACCTTGCTGATGGCTCAGAGTACAGATTGCAAGTTCTTATTGAAGCTGCTCCAGATTTGCTTGCTTTTGAGACCATTCCGAACAAACTTGAAGCTCAGGCTTGTGTCGAATTGCTTGAAGAAGAAAATGTCCAAATCCCATCTTGGATCTGTTTTACAACCGTTGATGGTGAGAATACTCCCTCGGGAGAGAGTTTCAAAGACTGCCTTGAAGCAATAAATAAGAGTGACAAAGTAGAGGCAGTTGGTATAAACTGTGCACCTCCCCATTTTATGGAAAATCTCATCTGCAAATTTAAGAAGTTGACAAAGAAGGCAATCATTGTCTATCCTAATAGTGGGGAGGTATGGGATGGTAGAGCCAAAAAATGGCTACCATCCAAGTGTTTTCACGATGATAATTTCGCATTTCATGCAACAAGATGGCGTGATTTAGGTGCTAAAATAATAGGAGGCTGCTGCCGGACTACACCCTCCACCATTCAAATTATGTCCAATGCTTTAGGAGAAAATTCTTAATTGTGCTCGTTGATGTGATTGATTTTGTCAAATTGCTATTTTTTGTCTAGACTTTTTCTATAATTTAAATTTTCAAAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01049	2541	14482	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00547	mmuM, BHMT2	EC:2.1.1.10	Cysteine and methionine metabolism	map00270
			Cysteine and methionine metabolism	map00270

Gene Ontology

molecular_function
GO:0008898 S-adenosylmethionine-homocysteine S-methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001049s00033660.1	PF02574.11	S-methyl_trans	22	305	1.50E-64

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.336
SRR1783600	control	1.314
SRR1783602	moderate drought stress	0.852
SRR1811619	moderate drought stress	0.844

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.704
DRR006520	Root Summer glycyrrhizin high producing strain	1.617
DRR006521	Root Winter glycyrrhizin high producing strain	5.531
DRR006522	Root Winter glycyrrhizin high producing strain	5.222
DRR006523	Root Summer glycyrrhizin low producing strain	1.700
DRR006524	Root Summer glycyrrhizin low producing strain	1.746
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.513
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.502

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.497
SRR2868004	Drought Stress (root)	6.600
SRR2967015	Control (root)	3.451

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.467
SRR9715740	Leaf	4.485
SRR9715741	Leaf	6.211
SRR9715739	Root	2.605
SRR9715742	Root	2.126
SRR9715743	Root	2.322

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	34.979
SRR8749028	MeJA induced 9h	26.819
SRR8749029	MeJA induced 9h	43.103
SRR8749030	Uninduced	67.512
SRR8749031	Uninduced	54.645
SRR8749032	Uninduced	46.725

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.902
SRR8400027	Control - Root	4.710