Gene detail

Gene detail information of Glyur001048s00031767.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G25230.1	0	rotamase FKBP 1
NR	XP_004492269.1	0	PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like isoform X1 [Cicer arietinum]
COG	YP_007069185.1	2.00E-35	Peptidylprolyl isomerase [Calothrix sp. PCC 7507]
Swissprot	tr\|Q38931\|FKB62_ARATH	0	Peptidyl-prolyl cis-trans isomerase FKBP62
trEMBL	tr\|I1KZ20\|I1KZ20_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G46090.2}

Sequence

Transcript Sequence

>Glyur001048s00031767.1
CCCTCTCTCTTACTCACATACACACACACAAAAGCCTTTCCCTTCCCATTGGAACTCTCTAGAACCTCACGCTAAGTAAGACCAAAACCGATCTTCCATTTTTTCTCGCGGCGCTGTGCGAAGTGTTGAAGAAGAGATCACGAAAAGCGATGGAGGAAGACTTGGAGATTCCCCGAGTGGAGGAGATGAACGAGGACTTCGATCTCCCCGAAGACAAGGTTGGAGAGGAGAGAGCGATCGGCGACAGTGGCCTTAAGAAGAAGCTCCTCAAGGAAGGTCAAGGTTGGGACACCCCCGAAATCGGCGACGAAGTCCATGTTCACTATACGGGGACTTTGCTTGATGGGACTAAGTTCGATTCTAGCCGCGACAGGGATGCTCCTTTCAGCTTCACGCTTGGACAAGGGCAAGTAATTAGAGGATGGGATGAAGGCATTAAAACCATGAAGAAAGGTGAAAATGCACTTTTCACCATCCCTGCTGAGCTAGCTTATGGTGAATCTGGTTCCCCTCCTACAATTCCTCCTAATGCAACACTCCAATTTGATGTTGAGCTGTTGTCTTGGACTAGTGTGAAGGACATATGTAAGGATGGCGGTATATTTAAGAAGATACTCAATGAGGGGGATAAATGGGAGAACCCCAAGGATCTTGATGAAGTATTGGTTAAGTATGAGGTTTGTCTGGAAGACGGAAAGGTTGTAGCGAAGTCTGATGGAGTGGAATTCACTGTCGGAGAGGGTCATTACTGTGATGCATTGTCGAAGGCTGTTAAAACCATGAAGAAGGGAGAGAAAGTGCTTTTGTCAGTAAAGCCACAGTATGGATTTGGTGCGAAGGGGAAGCCAGCACATGGGGATGAAGGGGCAGTTCCACCAAATGCAACATTGCGGATTACTCTTGAGTTGGTTTCTTGGAAGACTGTTTCAGAAGTAACTAGTGACAAGAAGGTCATAAAGAAGATCCTCAAGGAAGGGGAAGGATTTGAGCGTCCAAATGAGGGGGCCATTGTAAAATTGAAACTAATTGGCAAGCTGCAAGATGGTACTGTCTTTTTGAAAAAGGGCCATGATGAAGAAGAGCTGTTTGAATTCAAAACGGATGAGGAGAAAGTCGTTGATGGACTTGATAAAGCTATATTGACTATGAAGAAGGGTGAGGTAGCATTATTGACTATTGCGCCTGAGTATGCCTTTGGTTCATCAGAGTCCCAGCAGGAGTTGGCTGTAGTTCCTCCTAATTCAACTGTGTATTATGAAGTTGAGCTAGTGTCATTTGAGAAGGAGAAGGATTCCTGGGATCTGAACACACCAGAGAAAATTGAAGCTGCTGGTAAGAAGAAAGAAGAAGGGAATGTGTTGTTTAAAGCCGGTAAATACGCAAGAGCTTCCAAAAGATATGAAAAGGCTGCAAAGTACATCGAGTATGATTCCTCCTTCAGCGAGGAGGAGAAAAAGCAGGCAAGAACCTTGAAGATTGCCTCCAATCTTAACAATGCTGCTTGCAAGTTGAAGTTGAAAGAATATAAAGAAGCAGAGAGATTGTGCACCAAGGTGTTGGACATCGAGAGCACAAACGTGAAAGCCCTCTATAGAAGGGCTCAGGCGTACATGCAGCAGGATGACTTGGATTTGGCTGAATTTGACATTAAAAAAGCTCTTGAAATTGACCCTGACAACAGGGAAGTGAAGCTGGAGTACAAGACTTTGAAGGAAAAGAAACCAGCTACAGGCTACAGCGGTACTGAACTCGTGGGTATTGACAACAGAATCTGAACGTCATCCAATCTTTTATTAGCAACGAGTAAAAGATTAGTACCTGTTGTTTTCTGGGTTTGATCGTTGTTGTTGTATCGTTTATTGATGATTGATTTATGGGAGAAAATGGTGTTGGACATCCATTTCGTATTTATTACCGGATGTTAACATAATTGACTTGATTAAATCTTTCCCCATTGACTGTAATGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01048	33007	39623	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K09571	FKBP4_5	EC:5.2.1.8	Estrogen signaling pathway	map04915

Gene Ontology

biological_process
GO:0006457 protein folding

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001048s00031767.1	PF00254.23	FKBP_C	47	137	8.20E-34
Glyur001048s00031767.1	PF00254.23	FKBP_C	163	254	4.60E-16
Glyur001048s00031767.1	PF00254.23	FKBP_C	281	374	9.30E-20
Glyur001048s00031767.1	PF13414.1	TPR_11	450	508	2.30E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	103.136
SRR1783600	control	103.128
SRR1783602	moderate drought stress	89.710
SRR1811619	moderate drought stress	89.597

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	129.403
DRR006520	Root Summer glycyrrhizin high producing strain	126.558
DRR006521	Root Winter glycyrrhizin high producing strain	73.097
DRR006522	Root Winter glycyrrhizin high producing strain	69.795
DRR006523	Root Summer glycyrrhizin low producing strain	137.787
DRR006524	Root Summer glycyrrhizin low producing strain	138.090
DRR006525	Leaf Summer glycyrrhizin high producing strain	69.280
DRR006526	Leaf Summer glycyrrhizin high producing strain	68.932

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	195.388
SRR2868004	Drought Stress (root)	174.674
SRR2967015	Control (root)	164.743

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	109.283
SRR9715740	Leaf	142.133
SRR9715741	Leaf	160.114
SRR9715739	Root	8.290
SRR9715742	Root	76.569
SRR9715743	Root	63.406

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	114.740
SRR8749028	MeJA induced 9h	101.432
SRR8749029	MeJA induced 9h	85.392
SRR8749030	Uninduced	59.287
SRR8749031	Uninduced	56.582
SRR8749032	Uninduced	54.871

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	183.507
SRR8400027	Control - Root	165.905