Gene detail

Gene detail information of Glyur001048s00031765.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G60540.1	2.00E-91	pyridoxine biosynthesis 2
NR	XP_004506773.1	3.88E-137	PREDICTED: pyridoxal biosynthesis protein PDX2-like [Cicer arietinum]
COG	YP_005441479.1	3.00E-57	putative glutamine amidotransferase subunit PdxT [Caldilinea aerophila DSM 14535 = NBRC 104270]
Swissprot	tr\|Q8LAD0\|PDX2_ARATH	2.00E-114	Pyridoxal biosynthesis protein PDX2
trEMBL	tr\|I3SUR2\|I3SUR2_LOTJA	8.00E-135	Uncharacterized protein {ECO:0000313\|EMBL:AFK44004.1}

Sequence

Transcript Sequence

>Glyur001048s00031765.1
CGCCCCCAAATCCAATCGAAAAATTAATCCCGTTTAATTTTCATGAGGCTGCTAAACCTAAGTTTGGCAGTGCTTAAGCACTAAGCAGCACTAAGCATACATAAAGCAAAGCACCCTAACCCCCGAACTGTCACCAGGCAAGTTCAAACGAGAGGACCAAACTTGTTCCGTTATATATAACTCGCAGCAACAACCACTATATACGACCGCTATTATATCTCTGTTTTTTCTTCTTTTTCTTTTCTTCTCAGTCTTCATAGCATGGCCGTCGTTGGTGTCCTCGCGTTACAAGGATCTTTCAACGAACACATAGTCGCTCTGAGGAGGTTAGGGGTGAAAGGAGTGGAGATTCGGAAGCCGGAGCAGCTTCTCACTGTGAATTCCCTCATCATCCCTGGTGGAGAGAGCACCACTATGGCTAAGCTCGCCGAGTATCACAACTTGTTTCCAGCATTGCGAGAGTTTGTGCAAATGGGAAAGCCGGTTTGGGGAACCTGTGCAGGACTAATATTCCTGGCTGATAAAGCTTCAGGACAGAAAGCTGGTGGGCAACAACTGATTCAAAGCTTTGAGGCTGATCTTCCAGTACCAGAACTTGCATCCAAGGAAGGTGGTCCTGAAACATTTCGTGGTATTTTTATTCGTGCTCCAGCAATTCTTGAAGTAGGGCCACAAGTTCAAGTGCTGGCTGATTATCCTGTACCTTCTGAAGCATTGCTGAATTCTGATTCCTCTACTGAAGACAAAAAGGAGAATGCTGAGGAACCAAGTAAAGTTATAGTTGCTGTGAGACAAGCGAACATACTGGGAACTGCTTTTCATCCTGAATTGACAGCTGATACTCGATGGCATAGTTATTTCTTAAAGATGGCAAATGTGATTGAAGAAGAGGCCTCAAGTAGCATTGTTCCAGCACAAGTCGGTCCATGTTATAACCAACAACCAAGGAGTGACCTTCCTGTCTATCAATAGGACCAGAAGAAACACACAAGGACTTTATTAAACAATTGTGGATGATTTTTTTTTTAATTTATATAATTTGTTTTGGAAACAATATCTGATAATCATTAGTTTCCCTCTTTTGGAGTAATCTGATATACTGCATTAGTTTCTACCATGAATGATTGGAGTCATAGCAAAAGGGATCTCTGACTCCTCTAAAGTGATTACTCCTCTAAAGTGAGCAAATCACTTTAGAGTGTAAANTAATTAATCTCAATCATTGGTAAAAAAAATCAAAGGTTGATATTATAAGTACATGTATAACAAATCACCTTTAATTTTCTCATTAATGGTTAAGATTATTTATTTTACACTTTACTCACTTTAGAGGAGCNAAATCCAAGCAAAAGCATCATTGTGTTGCCAAATGCAAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01048	16815	22370	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K08681	pdxT, pdx2	EC:4.3.3.6	Vitamin B6 metabolism	map00750

Gene Ontology

biological_process

GO:0042819 vitamin B6 biosynthetic process

GO:0042823 pyridoxal phosphate biosynthetic process

molecular_function
GO:0004359 glutaminase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001048s00031765.1	PF01174.14	SNO	6	203	1.20E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.005
SRR1783600	control	9.977
SRR1783602	moderate drought stress	6.469
SRR1811619	moderate drought stress	6.345

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.204
DRR006520	Root Summer glycyrrhizin high producing strain	17.886
DRR006521	Root Winter glycyrrhizin high producing strain	27.036
DRR006522	Root Winter glycyrrhizin high producing strain	27.551
DRR006523	Root Summer glycyrrhizin low producing strain	12.246
DRR006524	Root Summer glycyrrhizin low producing strain	13.794
DRR006525	Leaf Summer glycyrrhizin high producing strain	103.158
DRR006526	Leaf Summer glycyrrhizin high producing strain	102.231

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.483
SRR2868004	Drought Stress (root)	23.017
SRR2967015	Control (root)	18.135

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	75.872
SRR9715740	Leaf	109.972
SRR9715741	Leaf	76.065
SRR9715739	Root	7.619
SRR9715742	Root	13.648
SRR9715743	Root	12.811

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	51.634
SRR8749028	MeJA induced 9h	29.181
SRR8749029	MeJA induced 9h	79.574
SRR8749030	Uninduced	10.733
SRR8749031	Uninduced	10.147
SRR8749032	Uninduced	18.393

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.982
SRR8400027	Control - Root	22.526