Gene detail information of Glyur001048s00031762 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G08940.2 | 6.00E-83 | light harvesting complex photosystem II |
| NR | XP_004506774.1 | 1.45E-124 | PREDICTED: LOW QUALITY PROTEIN: chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cicer arietinum] |
| Swissprot | tr|Q9XF88|CB4B_ARATH | 1.00E-110 | Chlorophyll a-b binding protein CP29.2, chloroplastic (Precursor) |
| trEMBL | tr|Q9XQB2|Q9XQB2_VIGRR | 6.00E-124 | Chlorophyll a/b binding protein CP29 {ECO:0000313|EMBL:AAD27878.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01048 | 10771 | 13974 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001048s00031762.1 | PF00504.16 | Chloroa_b-bind | 57 | 284 | 1.20E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.893 |
| SRR1783600 | control | 1.894 |
| SRR1783602 | moderate drought stress | 3.486 |
| SRR1811619 | moderate drought stress | 3.716 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.582 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.757 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.965 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.256 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.697 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.873 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 696.161 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 686.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 25.824 |
| SRR2868004 | Drought Stress (root) | 25.644 |
| SRR2967015 | Control (root) | 21.977 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 905.703 |
| SRR9715740 | Leaf | 767.062 |
| SRR9715741 | Leaf | 784.622 |
| SRR9715739 | Root | 7.630 |
| SRR9715742 | Root | 30.716 |
| SRR9715743 | Root | 22.397 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 40.154 |
| SRR8749028 | MeJA induced 9h | 20.382 |
| SRR8749029 | MeJA induced 9h | 37.274 |
| SRR8749030 | Uninduced | 22.418 |
| SRR8749031 | Uninduced | 7.596 |
| SRR8749032 | Uninduced | 57.180 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.993 |
| SRR8400027 | Control - Root | 7.452 |