Gene detail information of Glyur001047s00037843.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G05460.1 | 5.00E-57 | RNI-like superfamily protein |
| NR | XP_007041114.1 | 4.24E-153 | F-box/LRR-repeat protein 23, putative isoform 1 [Theobroma cacao] |
| Swissprot | tr|Q9M0U9|SKI19_ARATH | 1.00E-65 | F-box protein SKIP19 |
| trEMBL | tr|A0A061DXY4|A0A061DXY4_THECC | 2.00E-153 | F-box/LRR-repeat protein 23, putative isoform 1 {ECO:0000313|EMBL:EOX96946.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01047 | 47025 | 56410 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001047s00037843.1 | PF12937.2 | F-box-like | 25 | 70 | 4.80E-09 |
| Glyur001047s00037843.1 | PF13516.1 | LRR_6 | 145 | 165 | 0.12 |
| Glyur001047s00037843.1 | PF12937.2 | F-box-like | 286 | 330 | 3.30E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.231 |
| SRR1783600 | control | 0.244 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.099 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.064 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.062 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.124 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.126 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.053 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.098 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.582 |
| SRR2868004 | Drought Stress (root) | 2.710 |
| SRR2967015 | Control (root) | 1.851 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.117 |
| SRR9715740 | Leaf | 0.063 |
| SRR9715741 | Leaf | 0.235 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.069 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.937 |
| SRR8749028 | MeJA induced 9h | 29.762 |
| SRR8749029 | MeJA induced 9h | 48.674 |
| SRR8749030 | Uninduced | 1.856 |
| SRR8749031 | Uninduced | 2.478 |
| SRR8749032 | Uninduced | 11.197 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.271 |
| SRR8400027 | Control - Root | 0.313 |