Gene detail

Gene detail information of Glyur001043s00031421

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G46530.1	8.00E-83	NB-ARC domain-containing disease resistance protein
NR	KEH30519.1	0	NBS-LRR type disease resistance protein [Medicago truncatula]
COG	YP_007317828.1	9.00E-10	NB-ARC domain-containing protein [Cylindrospermum stagnale PCC 7417]
Swissprot	tr\|Q9M667\|RPP13_ARATH	2.00E-99	Disease resistance protein RPP13
trEMBL	tr\|A0A072UL87\|A0A072UL87_MEDTR	0	NBS-LRR type disease resistance protein {ECO:0000313\|EMBL:KEH30519.1}

Sequence

Transcript Sequence

>Glyur001043s00031421.1
ATGGCGGATAGCGTTGTTTCCTTTCTTTTGGAACACTTGTCAGAGTTGCTGTCACGTGAAGCCAAGTTACTGTGTGGCGTGGAGGACAGAGTTAGGTCCCTCCACAACGAGCTCGAAATCATAAACTCCTACCTCACAACAACAACAACAACCTCCGAGAAGAGCAAGAAGAGATCAGAGACGGAACAGAGAGTCGTGAGTCAGATTCGGGACGTCGCACACGTGGCAGAGGATGTCATCGACACGTTCATCGCCAACGTCGCCGTCCACAACAGGAGAACCAAGCTCGGAAGATTGCTCCACGGCGTCGACCACGCAAAGTCGCTCCATGATGTTGCCGAAAAAATAGATAAAATCAAAACGACGATCAACGAGATACACGACAACAGGGTCAGATACAACGACTTGGGAGAAAGCGGTGGCAGTGATTGGAGAGAAGAGGAGGAGGAGGAGAGGACACGGTCGCTTCACAGGCTGAGAAGGAACGTGGAGGAGGAAGATGTGGTGGGCTTTGTTCATGAATCAAGGGTGGTCGTTGACCGGCTCTTGGAAGGAGGGCCAGATTCAGGAACGCGGCGCGGCGTCGTTTCGATCATTGGTATGGGTGGATTGGGCAAGACTACCCTTGCACGAAAGGTCTATAACAGCAACGAGGTGAAGAAACACTTCAATTGCCGCACATGGGTCTACGTGTCAAACGAATGTAGGGCCAGGGAGCTCTTGCTTGGCCTTCTAAAGCATTTGATGCCAAACCCTGAATATGAATGTAGAAGAAGCAGCAGCAACAAGGAGGGTAAGAATGCAGATAAGCCTAGAGATTTTTCTAGCTTGAGTGAGGATGANTTGAAGAAAAGTGTGCGGGAATGCTTGGTGAGGAAAAGGTNTCTAGTAGTCCTCGATGACTTGTGGAGAAAGCAAGACTGGGATGAGGTACAAGATGCTTTTCCCGATAACAACAAAGGCAGCAGAATATTGATCACTAGTCGTCTCAAAGAAGTGGCCTCACATACCAGCCGAGATCCTCCTTACTCCCTTCAATTTCTCACTGAAAAACACAGCTGGCAGCTCTTCTCCAGAAAAGTGTTCCGGGGAGAAGAGTACCCATGTGATCTTGAGCCTCTTGGTAGGCAAATGGTTAAGAGCTGTGGCGGTTTGCCACTCTCTATTGTTGTACTTGCAGGGCTTCTGGCAAACAAGGAAAAGACACACAGAGAATGGTCCAAAGTGGTGGGTCATGTCAATTGGTATCTCATTCGAGACGAGACCAAAGTCAAAGATATAGTACTCAAACTCAGCTACGATAATTTACCAATGAGATTGAAGCCATGCTTTCTGTATTTAGGGATATTCCCTGAAGACTATGAAATTCATGTTAGACAACTGCTGGAACAATGGGTTGCTGAAGGATTTATACAGGAAATGGGGACTAGAGATCCAGATGATGTTGCTGAAGACTACTTGTATGAGCTCATTGATCGTAGCTTGGTCCAAGTAGCACGAGTGAAGGATGATGGGGGCGTGAAAACGTGTCGCATCCACGATCTTCTCCGGGACCTCTGCATATCCGAGAGCAAAGAGGACAAGGTTTTCCAAGTTTGTACGGATCATAACATTCTAATCCCCATAAAACCTCGCAGACTGACCATCCATTGCAACATGTCTCACTATGTTTCTTCAAGCACCAATGACCACTCAGGTGTCCGTTCTTTGTTTAGCTTTGACCCAAGCTACGATGTTGCTCGTGGCGAGTGGAAATGGCTTTCCAAAGGCTTCAAATTGGCTCGAGTGTTGGATCTCAATGGGATGTGTTGTATAAAGATCCCTTCCAACTTGGGGAACTTTATCCACTTGAGATACTTGAGAATAGACTCACAATTTATTAGAAGCCTTCCGACTTCTATATGCAACCTTCAAAATCTACAAACTTTAGACCTGGGACCCTCAGTCATGGTTATCTCGATTTCTTTCCCCTATGGTATATGGAATCTTAAGCATTTAAGGCATGTGTATACTTACGGGCCTATCGTGGTACGTGGCCGCCGTTCAAAATCATTTGGTGAAGCCATGTGGAACCTTCAAACCATCTCTTCCATTGTACTCACTAAACAAGTAGCAACTCTCATAGAGAACGGTAAATTCCCAAAACTTAGAAAATTGGGGTTGCAGATCTCCTCAAACTTCAAAGGTGATTTGTCCAAATTGCTACTAAACTTGCAACAGTTGAGGCATTTGAACAAGTTAAAAATTTACTTCAAAAAAGAAGATTGGCCTAGCTTGATCGGTTGTAAGCCTCAGGAAGTGATACAAAGTTTGAAACACTTGAGTCATCTCAGTGTATTACACATTGGCAATGCCAGGGACCTTGCAATGTATGCGGGCTTGTTTCCTCCCAACATTACCAAGTTGACACTGACAGGTATTACTTGCCTGAATGACGACGGGATGAATGCTCTTGGAAATCTCACAAAACTTCGAATTTTGGGCTTATGTGCAGGAATTCTNTCTTCAAATTCCTTTGAGCTTAATTGTGCTGCAGGCGGGTTCCCACAACTGCAGGTGTTTCGAATGAGTCATATGAAAGTCCAAAGATGGAAATTAGCTAATGGTGCGATGCCACACCTTCAAAGCCTTGTTGTCATCAACTGTTTTGAGTTGGATAGTCTCCCGAGTGAACTGTGGTNTCTGAGCGTCTTGAAAATGGTGTACATCAGGGAACACTTGTGTCACAACATGGACCTTGCAATGTATGCGGGCTTGTTTCCTCCCAACATTACCAAGTTGACACTGACAGGTATTACTTGCCTGAATGACGACGGGATGAATGCTCTTGGAAATCTCACAAAACTTCGAATTTTGGGCTTATGTGCAGGAATTCTTTCTTCAAATTCCTTTGAGCTTAATTGTGCTGCAGGCGGGTTCCCACAACTGCAGGTGTTTCGAATGAGTCATATGAAAGTCCAAAGATGGAAATTAGCTAATGGTGCGATGCCACACCTTCAAAGCCTTGTTGTCATCAACTGTTTTGAGTTGGATAGTCTCCCGAGTGAACTGTGGTTCTGA

Protein Sequence

>Glyur001043s00031421.1
MADSVVSFLLEHLSELLSREAKLLCGVEDRVRSLHNELEIINSYLTTTTTTSEKSKKRSETEQRVVSQIRDVAHVAEDVIDTFIANVAVHNRRTKLGRLLHGVDHAKSLHDVAEKIDKIKTTINEIHDNRVRYNDLGESGGSDWREEEEEERTRSLHRLRRNVEEEDVVGFVHESRVVVDRLLEGGPDSGTRRGVVSIIGMGGLGKTTLARKVYNSNEVKKHFNCRTWVYVSNECRARELLLGLLKHLMPNPEYECRRSSSNKEGKNADKPRDFSSLSEDXLKKSVRECLVRKRXLVVLDDLWRKQDWDEVQDAFPDNNKGSRILITSRLKEVASHTSRDPPYSLQFLTEKHSWQLFSRKVFRGEEYPCDLEPLGRQMVKSCGGLPLSIVVLAGLLANKEKTHREWSKVVGHVNWYLIRDETKVKDIVLKLSYDNLPMRLKPCFLYLGIFPEDYEIHVRQLLEQWVAEGFIQEMGTRDPDDVAEDYLYELIDRSLVQVARVKDDGGVKTCRIHDLLRDLCISESKEDKVFQVCTDHNILIPIKPRRLTIHCNMSHYVSSSTNDHSGVRSLFSFDPSYDVARGEWKWLSKGFKLARVLDLNGMCCIKIPSNLGNFIHLRYLRIDSQFIRSLPTSICNLQNLQTLDLGPSVMVISISFPYGIWNLKHLRHVYTYGPIVVRGRRSKSFGEAMWNLQTISSIVLTKQVATLIENGKFPKLRKLGLQISSNFKGDLSKLLLNLQQLRHLNKLKIYFKKEDWPSLIGCKPQEVIQSLKHLSHLSVLHIGNARDLAMYAGLFPPNITKLTLTGITCLNDDGMNALGNLTKLRILGLCAGILSSNSFELNCAAGGFPQLQVFRMSHMKVQRWKLANGAMPHLQSLVVINCFELDSLPSELWXLSVLKMVYIREHLCHNMDLAMYAGLFPPNITKLTLTGITCLNDDGMNALGNLTKLRILGLCAGILSSNSFELNCAAGGFPQLQVFRMSHMKVQRWKLANGAMPHLQSLVVINCFELDSLPSELWF

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01043	78303	87374	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001043s00031421.1	PF00931.17	NB-ARC	178	473	9.10E-78

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.085
SRR1783600	control	2.135
SRR1783602	moderate drought stress	1.767
SRR1811619	moderate drought stress	1.703

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	161.777
DRR006520	Root Summer glycyrrhizin high producing strain	157.069
DRR006521	Root Winter glycyrrhizin high producing strain	1.084
DRR006522	Root Winter glycyrrhizin high producing strain	1.005
DRR006523	Root Summer glycyrrhizin low producing strain	111.563
DRR006524	Root Summer glycyrrhizin low producing strain	110.170
DRR006525	Leaf Summer glycyrrhizin high producing strain	53.137
DRR006526	Leaf Summer glycyrrhizin high producing strain	54.724

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.612
SRR2868004	Drought Stress (root)	18.688
SRR2967015	Control (root)	114.934

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	51.787
SRR9715740	Leaf	125.631
SRR9715741	Leaf	62.846
SRR9715739	Root	42.107
SRR9715742	Root	173.913
SRR9715743	Root	146.957

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.027
SRR8749028	MeJA induced 9h	1.535
SRR8749029	MeJA induced 9h	2.330
SRR8749030	Uninduced	0.430
SRR8749031	Uninduced	0.620
SRR8749032	Uninduced	0.413

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.523
SRR8400027	Control - Root	87.148