Gene detail

Gene detail information of Glyur001043s00031420.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G09680.2	1.00E-59	reduced lateral root formation
NR	XP_004513673.1	6.52E-107	PREDICTED: cytochrome b5 reductase 4-like [Cicer arietinum]
COG	YP_008870122.1	3.00E-07	soluble cytochrome b558 [candidate division WWE3 bacterium RAAC2_WWE3_1]
Swissprot	tr\|Q9LXD1\|RLF_ARATH	8.00E-75	Cytochrome b5 domain-containing protein RLF {ECO:0000305}
trEMBL	tr\|I3S1V2\|I3S1V2_LOTJA	2.00E-106	Uncharacterized protein {ECO:0000313\|EMBL:AFK34244.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01043	63295	66200	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00326	E1.6.2.2	EC:1.6.2.2	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

molecular_function
GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001043s00031420.1	PF00173.23	Cyt-b5	155	236	1.20E-21

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	24.200
SRR1783600	control	24.611
SRR1783602	moderate drought stress	21.001
SRR1811619	moderate drought stress	20.722

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	36.843
DRR006520	Root Summer glycyrrhizin high producing strain	38.338
DRR006521	Root Winter glycyrrhizin high producing strain	59.706
DRR006522	Root Winter glycyrrhizin high producing strain	59.632
DRR006523	Root Summer glycyrrhizin low producing strain	74.397
DRR006524	Root Summer glycyrrhizin low producing strain	72.909
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.474
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.136

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	40.953
SRR2868004	Drought Stress (root)	52.786
SRR2967015	Control (root)	40.405

SRA Experiment	Description	TPM
SRR9715738	Leaf	80.296
SRR9715740	Leaf	75.429
SRR9715741	Leaf	91.985
SRR9715739	Root	12.243
SRR9715742	Root	41.682
SRR9715743	Root	36.588

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	113.828
SRR8749028	MeJA induced 9h	109.365
SRR8749029	MeJA induced 9h	125.377
SRR8749030	Uninduced	78.657
SRR8749031	Uninduced	127.960
SRR8749032	Uninduced	87.185

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	65.160
SRR8400027	Control - Root	86.293